Gene
RNA
| Item | Value |
|---|---|
| gene id | G1047421 |
| gene name | gdnf |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 20690476 ~ 20691901 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| gdnf | Enables protein homodimerization activity. Involved in several processes, including negative regulation of apoptotic process; positive regulation of morphogenesis of an epithelium; and regulation of RNA metabolic process. Acts upstream of or within several processes, including neural crest cell migration; neuron projection development; and positive regulation of cell population proliferation. Located in Golgi apparatus and extracellular region. Implicated in Hirschsprung's disease; Parkinsonism; congenital central hypoventilation syndrome; epilepsy; and pheochromocytoma. Biomarker of acoustic neuroma; autoimmune disease (multiple); neurodegenerative disease (multiple); pancreatic cancer; and vasculitis (multiple). |
| description |
|---|
| glial cell line-derived neurotrophic factor-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1193669 | True | 1426 | lncRNA | 0.49 | 1 | 20690476 | 20691901 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110537157 | LOC101448024 | coding | downstream | 51795 | 20607973 ~ 20638681 (-) |
| LOC110537156 | LOC106568185 | coding | downstream | 91000 | 20488123 ~ 20599476 (-) |
| LOC110536815 | LOC106568184 | coding | downstream | 202927 | 20374335 ~ 20487549 (-) |
| LOC110537153 | LOC106568182 | coding | downstream | 711796 | 19941506 ~ 19978680 (-) |
| LOC110536814 | LOC106568181 | coding | downstream | 751892 | 19893417 ~ 19938584 (-) |
| LOC110537159 | LOC106568248 | coding | upstream | 97954 | 20789855 ~ 20797912 (-) |
| gltp | LOC106568188 | coding | upstream | 162925 | 20854826 ~ 20857785 (-) |
| LOC110537162 | LOC106568189 | coding | upstream | 170657 | 20862558 ~ 20888980 (-) |
| LOC118937642 | NA | coding | upstream | 218793 | 20910694 ~ 20912332 (-) |
| LOC110537166 | srsf9 | coding | upstream | 242053 | 20933954 ~ 20938307 (-) |
| G1047419 | NA | non-coding | downstream | 1348 | 20688871 ~ 20689128 (-) |
| G1047414 | NA | non-coding | downstream | 11958 | 20673556 ~ 20678518 (-) |
| G1047412 | NA | non-coding | downstream | 19303 | 20670949 ~ 20671173 (-) |
| G1047411 | NA | non-coding | downstream | 19627 | 20670650 ~ 20670849 (-) |
| G1047410 | NA | non-coding | downstream | 21594 | 20667484 ~ 20668882 (-) |
| G1047422 | NA | non-coding | upstream | 102 | 20692003 ~ 20694015 (-) |
| G1047472 | NA | non-coding | upstream | 2320 | 20694221 ~ 20695538 (-) |
| G1047477 | NA | non-coding | upstream | 15204 | 20707105 ~ 20707329 (-) |
| G1047478 | NA | non-coding | upstream | 15687 | 20707588 ~ 20707787 (-) |
| G1047487 | NA | non-coding | upstream | 33753 | 20725654 ~ 20727417 (-) |
| G1047325 | NA | other | downstream | 194048 | 20495565 ~ 20496428 (-) |
| LOC110537144 | LOC106568168 | other | downstream | 1131807 | 19550953 ~ 19569458 (-) |
| LOC110537130 | LOC106568157 | other | downstream | 1785370 | 18833119 ~ 18907377 (-) |
| G1047473 | NA | other | upstream | 9639 | 20701540 ~ 20702040 (-) |
| G1048931 | NA | other | upstream | 1093290 | 21785191 ~ 21785557 (-) |
| G1048983 | NA | other | upstream | 1197637 | 21889538 ~ 21889869 (-) |
