G1047422


Basic Information

Item Value
gene id G1047422
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 20692003 ~ 20694015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1193670
aaaataactcaacacacagccattaatgtctaaactgctttcttcagtgttgtcacatgaaaagatatactcaaatatttactaaactgtgaggggtgtactcacttgtgtgatatactgtatgttggatgcatttgcagtttgttttggttatgTTACGGATGATGTTTTTCCCAATAGtaaatcatgtatttaatgtattcacttttattgtaaataagaatataatgtgTTTCGGGAACACTTCTGCATTAATGTAGTTCCTAGcaatgattacggataatcaagaatgaatcgtgaataatgatgagtgagaaagttagacataaatatcatacccccccaaaaatgttaacCTCCCCTGTTGGTAAagatgagaggttagcatgtcttggaggtatgaccTTCGTATCTCTAACTGtatcattgtgtgctaggaatatgggaccaaatacaacATTTCTGACCACTTTAATACACCTGTGTGATTCTGTACAAATAtttatgacaccttcaaatggggggactagattCATAGAGCTTACATTTTTAAACGGATAAACAGAATGTTGGAAAATACCctaaaataaaaggtgacattctgtactgtcacctcATATGAAGTATTTGATCTcaaagtgaaaatgctggagtatagaccCAAATGAAAAGTttaagcttcactgtccaaatacatttGTAGGGGAGTGCATGTCGATTTGGCTAAGAGAGGCAGAGCCTAGATCGCCCTTAAATGGTCTTAAACATTGGTGTTCCAGTGGGGGTAGTGGGCTAAGCTGCATGTTAGAGCACTGTTTTCAAACAAACCCCAGATCAGTAAGAAAAACCTGCATGTCTGTCAAAGCAGAgaccacagagacagagacactccCAGGAACGCTAAAGCCTACTGGGACAGTAACCACTACGAAGTTTTTGCCCAGACTTGGTGTAGAGCCAGGACCAGACTGAAGGGTTGAGGGTAACAGACCCTGGCAGCCAAGTGTACATGCATACCATCAACTTCTGCACTGCACTGTGATGGCCAAAGGACAGTGGGTCCCTTTTCCACAGTCTAGCGTCAAGGTTTTTACTGACTGCTTCTATGATATCAGAGATTTTCTGTGCTACCATCACTCCTGGCTAGCTTTTATGTAGCATTTTGTAAAGAGTTTAGTAACACATTACTTTGCAAATGGTGTGATAGAAAGAGAATGTAAGTTAATTGAAAGCAGTGGGCCTGAAGGCTGGCCATATCCAACCTGTCCTGCACCACCTCTCTAGCAATGAGGTCATTTTGTTATTCTGTCTATAAAAAAAGAGGATGTCTTGAAATAATGTGGAGAGTATCATTGTAAAGAAAGCTACACAGCTCTCCGGGATAACCACTGGCAGTACGACTTTATGCCTAGAAAATAAACAATGAATGCAGGCTTTGTATGTTCCTTTGTAAACCGATAATGGCATGCCATGATTTTGGCAGTAGTCTTGTTTACCCATCTACTTGGTTAGCGTGAGGAGTGAGGAGCAGCTGACTGGTGTCTCCCAGGCCCTCAGCCCCTAACGCCCCAGGCTGCTCAGCCCTCTCTGCTTTCCATTAGTGACAAATGAGGAACACTGTCAAAGACGCTCAAACCTGGCATCATTCAAAAGGATCGAAAGCAGAGATAAGATTTGTAAGTTTTGAAAAAGGTTGGAATTGGTCCGCTCCACCCTGTCACTTCCTTTCTGCGCCCCCTCTCTAAATCGATAGCTTCTGTTATTCTCATAAATCTATGATGTTTTGGAATCGGCAGTGAGTTTAGGATTAACTACCATGGATTACAGACTTTGTACAGCATTTTGAAACTGAAGGATGAGTTTGATTAGTTATGGCTGCACCTTGAATCTGGTTGTTTCAGCACAATCTGATTCTACTTAGAAAACACATGCTCGACTTTGGTACCATCCGGGACAAAACAGAGCTCAAATAAATaagaaaaacaaacatttctttcATAAAATGGACTGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1193670 True 2013 lncRNA 0.40 1 20692003 20694015

Neighbor

gene id symbol gene type direction distance location
LOC110537157 LOC101448024 coding downstream 53322 20607973 ~ 20638681 (-)
LOC110537156 LOC106568185 coding downstream 92527 20488123 ~ 20599476 (-)
LOC110536815 LOC106568184 coding downstream 204454 20374335 ~ 20487549 (-)
LOC110537153 LOC106568182 coding downstream 713323 19941506 ~ 19978680 (-)
LOC110536814 LOC106568181 coding downstream 753419 19893417 ~ 19938584 (-)
LOC110537159 LOC106568248 coding upstream 95840 20789855 ~ 20797912 (-)
gltp LOC106568188 coding upstream 160811 20854826 ~ 20857785 (-)
LOC110537162 LOC106568189 coding upstream 168543 20862558 ~ 20888980 (-)
LOC118937642 NA coding upstream 216679 20910694 ~ 20912332 (-)
LOC110537166 srsf9 coding upstream 239939 20933954 ~ 20938307 (-)
G1047421 gdnf non-coding downstream 102 20690476 ~ 20691901 (-)
G1047419 NA non-coding downstream 2875 20688871 ~ 20689128 (-)
G1047414 NA non-coding downstream 13485 20673556 ~ 20678518 (-)
G1047412 NA non-coding downstream 20830 20670949 ~ 20671173 (-)
G1047411 NA non-coding downstream 21154 20670650 ~ 20670849 (-)
G1047472 NA non-coding upstream 206 20694221 ~ 20695538 (-)
G1047477 NA non-coding upstream 13090 20707105 ~ 20707329 (-)
G1047478 NA non-coding upstream 13573 20707588 ~ 20707787 (-)
G1047487 NA non-coding upstream 31639 20725654 ~ 20727417 (-)
G1047489 NA non-coding upstream 36373 20730388 ~ 20730670 (-)
G1047325 NA other downstream 195575 20495565 ~ 20496428 (-)
LOC110537144 LOC106568168 other downstream 1133334 19550953 ~ 19569458 (-)
LOC110537130 LOC106568157 other downstream 1786897 18833119 ~ 18907377 (-)
G1047473 NA other upstream 7525 20701540 ~ 20702040 (-)
G1048931 NA other upstream 1091176 21785191 ~ 21785557 (-)
G1048983 NA other upstream 1195523 21889538 ~ 21889869 (-)

Expression


Co-expression Network