G1048070


Basic Information

Item Value
gene id G1048070
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21217513 ~ 21258288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1194382
ccttacgttcgggagccgacagagagtatagtctaccccgggggggagtggttcccggaaggagatcaatactacaatcatacgaccggtgtggaggaagagaggtggccctggaccgactgaacaccgtgcgcagatcgtgatattcctccggcacccctgtcaaatcaccaggctcctcctgtttcctctgtctcttcttcacaggaggagcctggtgatttgacaggggtgccggaggaatatcacgatctgcgcacggtgttcagtcggtccagggccacctctcttcctccacaccggtcgtatg

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1194382 True 310 lncRNA 0.58 2 21217513 21258288

Neighbor

gene id symbol gene type direction distance location
LOC110537168 LOC106568260 coding upstream 253046 20961503 ~ 20964467 (+)
LOC110537167 LOC106568193 coding upstream 283647 20932536 ~ 20933866 (+)
LOC110537163 LOC106568190 coding upstream 304721 20891988 ~ 20912792 (+)
LOC110537160 LOC106564165 coding upstream 371251 20804025 ~ 20846262 (+)
LOC118937641 NA coding upstream 416461 20796080 ~ 20801052 (+)
LOC110537171 LOC106568197 coding downstream 30796 21289084 ~ 21298403 (+)
LOC110537175 LOC106568200 coding downstream 206259 21464547 ~ 21481116 (+)
LOC110536816 myhz2 coding downstream 252201 21510489 ~ 21516816 (+)
LOC110537179 LOC106568202 coding downstream 340477 21598765 ~ 21626234 (+)
foxred1 foxred1 coding downstream 370009 21628297 ~ 21643733 (+)
G1047952 NA non-coding upstream 93731 21123578 ~ 21123782 (+)
G1047816 NA non-coding upstream 188498 21028744 ~ 21029015 (+)
G1047803 NA non-coding upstream 193389 21022260 ~ 21024124 (+)
G1047776 NA non-coding upstream 210625 21006536 ~ 21006888 (+)
G1047766 NA non-coding upstream 218763 20998463 ~ 20998750 (+)
G1048104 NA non-coding downstream 11004 21269292 ~ 21269505 (+)
G1048109 NA non-coding downstream 16885 21275173 ~ 21312642 (+)
G1048086 NA non-coding downstream 67526 21325814 ~ 21330328 (+)
G1048194 NA non-coding downstream 142247 21400535 ~ 21409688 (+)
G1048237 NA non-coding downstream 224270 21482558 ~ 21482871 (+)
LOC110537158 LOC106568186 other upstream 525771 20667957 ~ 20694090 (+)
G1046929 NA other upstream 705994 20509269 ~ 20511519 (+)
G1046823 NA other upstream 923662 20282886 ~ 20293851 (+)
G1046724 NA other upstream 1070099 20144179 ~ 20147414 (+)
G1045418 NA other upstream 2251571 18965568 ~ 18965942 (+)
G1048417 LOC106568221 other downstream 574806 21833094 ~ 21834812 (+)
G1049502 NA other downstream 1267653 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 1470642 22728930 ~ 22737666 (+)
G1051534 NA other downstream 2919142 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 4094296 25352530 ~ 25719607 (+)

Expression


Co-expression Network