G1048109


Basic Information

Item Value
gene id G1048109
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21275173 ~ 21312642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1194428
ATGACTGAGTGAGACCCTGAGGTTGTTTGTTTCGCACAAGATTTCTGACCAAAATGCCAATCAATAAATCTTGAACTCCAATAAACCCATTACTATTATGCAACACCCATCTACAGTTCTGAAGTCTAACGCCCATGAAGTTCCTGGTAGCCAGTAGTCAGCCTCGTCGTGACAGATCAATGTCCATGCAGCTGATGGTCCATGAAGACCGACTCCGGGGAATAGAACACTAAAGAGTGGGGTTAGCTTCTTTTCCACCGGAACATCGCCAGGCCACTTCTATTCCTCCTCTGTTTCGTATTGGTGTTTGATGTGTTTCCATAGTTTCCCCCGATTCAATTGCTCAAATATGGCATCGCCTCCCTGGTCAAACATTCGTTCAAAAAACACTGCTCCGACCATGATGGTAACGGCAAAAGTAGATGTTCTCCTGAAGAGCAAATTGTAGACACCTTTAGCGAGCGACATGTTAACTGATGGTGATTTCGAGAAA
>TU1194426
TAGGTTTATGTTGAGTTTATTAACAGTTTTAATTTATCAGTACATTTACAAATTGTGAGGAACATGAGGGCATGACAATAACAATTGATAGGAAAGACTTCCATGATTTTCTGAGTTCTGACAAGTCTAACGCCCATGAAGTTCCTGGTAGCCAGTAGTCAGCCTCGTCGTGACAGATCAATGTCCATGCAGCTGATGGTCCATGAAGACCGACTCCGGGGAATAGAACACTAAAGAGTGGGGTTAGCTTCTTTTCCACCGGAACATCGCCAGGCCACTTCTATTCCTCCTCTGTTTCGTATTGGTGTTTGATGTGTTTCCATAGTTTCCCCGATTCAATTGCTCAAATATGGCATCGCCTCCCTGGTCAAACATTCGTTCAAAAAACACTGCTCCGACCATGATGGTAACGGCAAAAGTAGATGTTCTCCTGAAGAGCAAATTGTAGACACCTTTAGCGAGCGACATGTTAACTGATGGTGATTTCGAGAAA
>TU1194427
TAGGTTTATGTTGAGTTTATTAACAGTTTTAATTTATCAGTACATTTACAAATTGTGAGGAACATGAGGGCATGACAATAACAATTGATAGGAAAGACTTCCATGATTTTCTGAGTTCTGACAAGTCTAACGCCCATGAAGTTCCTGGTAGCCAGTAGTCAGCCTCGTCGTGACAGATCAATGTCCATGCAGCTGATGGTCCATGAAGACCGACTCCGGGGAATAGAACACTAAAGAGTGGGGTTAGCTTCTTTTCCACCGGAACATCGCCAGGCCACTTCTATTCCTCCTCTGTTTCGTATTGGTGTTTGATGTGTTTCCATAGTTTCCCCCCGATTCAATTGCTCAAATATGGCATCGCCTCCCTGGTCAAACATTCGTTCAAAAAACACTGCTCCGACCATGATGGTAACGGCAAAAGTAGATGTTCTCCTGAAGAGCAAATTGTAGACACCTTTAGCGAGCGACATGTTAACTGATGGTGATTTCGAGAAA

Function

NR:

description
cytochrome b-c1 complex subunit 9

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1194428 False 493 lncRNA 0.45 3 21275173 21312642
TU1194426 False 493 lncRNA 0.43 2 21311934 21312642
TU1194427 True 495 lncRNA 0.43 2 21311934 21312642

Neighbor

gene id symbol gene type direction distance location
LOC110537168 LOC106568260 coding upstream 310706 20961503 ~ 20964467 (+)
LOC110537167 LOC106568193 coding upstream 341307 20932536 ~ 20933866 (+)
LOC110537163 LOC106568190 coding upstream 362381 20891988 ~ 20912792 (+)
LOC110537160 LOC106564165 coding upstream 428911 20804025 ~ 20846262 (+)
LOC118937641 NA coding upstream 474121 20796080 ~ 20801052 (+)
LOC110537175 LOC106568200 coding downstream 151905 21464547 ~ 21481116 (+)
LOC110536816 myhz2 coding downstream 197847 21510489 ~ 21516816 (+)
LOC110537179 LOC106568202 coding downstream 286123 21598765 ~ 21626234 (+)
foxred1 foxred1 coding downstream 315655 21628297 ~ 21643733 (+)
LOC110537183 LOC105014907 coding downstream 342750 21655392 ~ 21666107 (+)
G1048104 NA non-coding upstream 5668 21269292 ~ 21269505 (+)
G1048070 NA non-coding upstream 16885 21217513 ~ 21258288 (+)
G1047952 NA non-coding upstream 151391 21123578 ~ 21123782 (+)
G1047816 NA non-coding upstream 246158 21028744 ~ 21029015 (+)
G1047803 NA non-coding upstream 251049 21022260 ~ 21024124 (+)
G1048086 NA non-coding downstream 13172 21325814 ~ 21330328 (+)
G1048194 NA non-coding downstream 87893 21400535 ~ 21409688 (+)
G1048237 NA non-coding downstream 169916 21482558 ~ 21482871 (+)
G1048250 NA non-coding downstream 175971 21488613 ~ 21488842 (+)
G1048253 NA non-coding downstream 179165 21491807 ~ 21492020 (+)
LOC110537158 LOC106568186 other upstream 583431 20667957 ~ 20694090 (+)
G1046929 NA other upstream 763654 20509269 ~ 20511519 (+)
G1046823 NA other upstream 981322 20282886 ~ 20293851 (+)
G1046724 NA other upstream 1127759 20144179 ~ 20147414 (+)
G1045418 NA other upstream 2309231 18965568 ~ 18965942 (+)
G1048417 LOC106568221 other downstream 520452 21833094 ~ 21834812 (+)
G1049502 NA other downstream 1213299 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 1416288 22728930 ~ 22737666 (+)
G1051534 NA other downstream 2864788 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 4039942 25352530 ~ 25719607 (+)

Expression


Co-expression Network