G1048194


Basic Information

Item Value
gene id G1048194
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21400535 ~ 21409688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1194519
aagagacatggagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaaaaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctgatcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatgcccactgtcaaacat

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1194519 True 308 lncRNA 0.42 2 21400535 21409688

Neighbor

gene id symbol gene type direction distance location
LOC110537171 LOC106568197 coding upstream 102132 21289084 ~ 21298403 (+)
LOC110537168 LOC106568260 coding upstream 436068 20961503 ~ 20964467 (+)
LOC110537167 LOC106568193 coding upstream 466669 20932536 ~ 20933866 (+)
LOC110537163 LOC106568190 coding upstream 487743 20891988 ~ 20912792 (+)
LOC110537160 LOC106564165 coding upstream 554273 20804025 ~ 20846262 (+)
LOC110537175 LOC106568200 coding downstream 54859 21464547 ~ 21481116 (+)
LOC110536816 myhz2 coding downstream 100801 21510489 ~ 21516816 (+)
LOC110537179 LOC106568202 coding downstream 189077 21598765 ~ 21626234 (+)
foxred1 foxred1 coding downstream 218609 21628297 ~ 21643733 (+)
LOC110537183 LOC105014907 coding downstream 245704 21655392 ~ 21666107 (+)
G1048086 NA non-coding upstream 70207 21325814 ~ 21330328 (+)
G1048109 NA non-coding upstream 87893 21275173 ~ 21312642 (+)
G1048104 NA non-coding upstream 131030 21269292 ~ 21269505 (+)
G1048070 NA non-coding upstream 142247 21217513 ~ 21258288 (+)
G1047952 NA non-coding upstream 276753 21123578 ~ 21123782 (+)
G1048237 NA non-coding downstream 72870 21482558 ~ 21482871 (+)
G1048250 NA non-coding downstream 78925 21488613 ~ 21488842 (+)
G1048253 NA non-coding downstream 82119 21491807 ~ 21492020 (+)
G1048256 NA non-coding downstream 83848 21493536 ~ 21493765 (+)
G1048257 NA non-coding downstream 92564 21502252 ~ 21502656 (+)
LOC110537158 LOC106568186 other upstream 708793 20667957 ~ 20694090 (+)
G1046929 NA other upstream 889016 20509269 ~ 20511519 (+)
G1046823 NA other upstream 1106684 20282886 ~ 20293851 (+)
G1046724 NA other upstream 1253121 20144179 ~ 20147414 (+)
G1045418 NA other upstream 2434593 18965568 ~ 18965942 (+)
G1048417 LOC106568221 other downstream 423406 21833094 ~ 21834812 (+)
G1049502 NA other downstream 1116253 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 1319242 22728930 ~ 22737666 (+)
G1051534 NA other downstream 2767742 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 3942896 25352530 ~ 25719607 (+)

Expression


Co-expression Network