G1048903 (ssh1)


Basic Information

Item Value
gene id G1048903
gene name ssh1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21715390 ~ 21715785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1195313
gcGCAACcctagggacgtcccaaggatagCACTAACCAATACCTCATGACTGCAGTGCAGTAAGAATAAGTGGCAGATGCTCCTCATGTAGCACAGTTGGTTACATGCCAGAGCAAACCTGCATATACCAGTACAGTACCCCAGTATACCCTGACTCACCTAGCGTCCAGGATGCCCTCGTACTCGGCCAGCTGCTTCATAAAGCCAGCGTTGGGCCGAGCAATGCTCCTCTTCTGCTTCACAAAGTTGTAGGCCTTCTCCAGAGTCCAGCCATACTCCTTCATGGCATACGCTATGACCGTGGAGGCTGACCGGCTCACACCCATCTTACAGTGGACCAGACACTTAGACTGGTTCTTTCTGTGGGGCAATAATGTTTTACATTTAAACCCTGTT

Function

symbol description
ssh1 Enables actin binding activity and phosphoprotein phosphatase activity. Involved in actin cytoskeleton organization; cell morphogenesis; and protein dephosphorylation. Acts upstream of or within cellular response to ATP and regulation of cellular protein metabolic process. Located in cytoplasm and plasma membrane.

NR:

description
protein phosphatase Slingshot homolog 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1195313 True 396 lncRNA 0.51 1 21715390 21715785

Neighbor

gene id symbol gene type direction distance location
LOC118937644 LOC106564323 coding downstream 45923 21667423 ~ 21669467 (-)
cry5 LOC106568206 coding downstream 60145 21645814 ~ 21655245 (-)
LOC110536817 LOC106568205 coding downstream 133099 21559869 ~ 21582291 (-)
LOC110537178 susd2 coding downstream 170896 21526367 ~ 21544494 (-)
LOC110539130 LOC106568216 coding downstream 190499 21523514 ~ 21524891 (-)
LOC118937645 NA coding upstream 13885 21729670 ~ 21735445 (-)
iscua iscua coding upstream 50242 21766027 ~ 21768958 (-)
LOC110537191 LOC106568213 coding upstream 62084 21777869 ~ 21780448 (-)
LOC110537196 LOC106568212 coding upstream 88908 21804693 ~ 21805631 (-)
LOC110537198 LOC106568221 coding upstream 113373 21829158 ~ 21852005 (-)
G1048900 NA non-coding downstream 2551 21712618 ~ 21712839 (-)
G1048859 NA non-coding downstream 34628 21680536 ~ 21680762 (-)
G1048636 kctd10 non-coding downstream 49321 21664105 ~ 21666069 (-)
G1048834 LOC106568202 non-coding downstream 97892 21617199 ~ 21617498 (-)
G1048904 NA non-coding upstream 52 21715837 ~ 21716042 (-)
G1048906 NA non-coding upstream 3050 21718835 ~ 21719082 (-)
G1048908 LOC106568203 non-coding upstream 4343 21720128 ~ 21720764 (-)
G1048910 NA non-coding upstream 11405 21727190 ~ 21727397 (-)
G1048932 NA non-coding upstream 70614 21786399 ~ 21786618 (-)
LOC110537166 srsf9 other downstream 778489 20933954 ~ 20938307 (-)
LOC110537162 LOC106568189 other downstream 849309 20862558 ~ 20888980 (-)
G1047473 NA other downstream 1013350 20701540 ~ 20702040 (-)
LOC110537156 LOC106568185 other downstream 1115963 20488123 ~ 20599476 (-)
G1047325 NA other downstream 1218962 20495565 ~ 20496428 (-)
G1048931 NA other upstream 69406 21785191 ~ 21785557 (-)
G1048983 NA other upstream 173753 21889538 ~ 21889869 (-)
G1049013 LOC106568226 other upstream 215398 21931183 ~ 21931785 (-)
G1048996 NA other upstream 221546 21937331 ~ 21938200 (-)
G1048995 NA other upstream 222661 21938446 ~ 21942996 (-)

Expression


Co-expression Network