XLOC_002955 (BX323076.2)


Basic Information

Item Value
gene id XLOC_002955
gene name BX323076.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37041078 ~ 37042232 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005454
GCAACAGCTGCTATCCCCTCCCCTCTCGATGCTAAACCCATGCTCGACGTCTCTGTCGTAATGTCCTGTCCCACGTTGAACTCCACTCAAGACGTCTGCTCATGGATCTCTACTTGATCACCTGCTTAACCTAACAGAGGCAATACAGTGCGTCTACTTTCTGTGTGACAGCTACACATTTTACCCGTTCACCACAGGGTCCTAGTACCCCCAAAACTTCACCTGAGAAAACTACCCTCACTGTCACTGATCTTGAATTATTCCCCTTCTCGGATCCAGCCCTCCTCTGTTCCCCTTTCCTTTCTTCTCCTGCCCTATCCTGAACTGTTGGTTTCTCCATGGCCTTCTCGTCTCGTTTCTCATTTTGGGAGAAAAAGGGAAGTACAGTTTCATGCTGTTTGCTCATGAACTTATCGTGTGTGCAGGACAGGTGAAATCAAACCAGTTCCTATTACCTTGAAAACTCCTGCTTTGTCTTAAAAGAGTCCTTaagtacttaaagggatagtttacccaaaaacaaaaagacccactattta

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0090665 glycoprotein complex cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0031430 M band cellular_component
GO:0016010 dystrophin-associated glycoprotein complex cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097288

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005454 True 539 lncRNA 0.46 2 37041078 37042232

Neighbor

gene id symbol gene type direction distance location
XLOC_002953 sez6a coding downstream 113484 36828069 ~ 36927594 (-)
XLOC_002952 phf12a coding downstream 215094 36811372 ~ 36825984 (-)
XLOC_002951 dhrs13a.1 coding downstream 232730 36795861 ~ 36808348 (-)
XLOC_002950 dhrs13a.2 coding downstream 247666 36784756 ~ 36793412 (-)
XLOC_002949 PLEKHB1 coding downstream 302436 36731039 ~ 36738642 (-)
XLOC_002956 omga coding upstream 292038 37334270 ~ 37337579 (-)
XLOC_002957 CT573231.1 coding upstream 310248 37352480 ~ 37357303 (-)
XLOC_002958 NA coding upstream 376002 37418234 ~ 37476245 (-)
XLOC_002959 si:dkey-65j4.2 coding upstream 443171 37485403 ~ 37487721 (-)
XLOC_002960 NA coding upstream 687079 37729311 ~ 38025967 (-)
XLOC_002945 AL845435.1 non-coding downstream 378467 36654197 ~ 36662611 (-)
XLOC_002944 NA non-coding downstream 390174 36642166 ~ 36650904 (-)
XLOC_002942 NA non-coding downstream 430177 36595380 ~ 36610901 (-)
XLOC_002939 NA non-coding downstream 571183 36465343 ~ 36469895 (-)
XLOC_002926 BX088524.4 non-coding downstream 877784 36163179 ~ 36163294 (-)
XLOC_002961 NA non-coding upstream 823187 37865419 ~ 37889561 (-)
XLOC_002962 NA non-coding upstream 987128 38029360 ~ 38168078 (-)

Expression


Co-expression Network