G1048399


Basic Information

Item Value
gene id G1048399
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21770086 ~ 21770287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1194740
tggctgtgtgcttagggtcatttttcTGTTTGAAGGTCAACCTTTGCctctgtctgaggtcctgagcgctctggagcaggttttcatcaatgatctttctgtactttgctccattcatctttccctcgatcctgaattGTCTCCCAGTCAttgccgctaaaaaacatccccacagcatgatgctgccaccaccatgtttcac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1194740 True 202 lncRNA 0.48 1 21770086 21770287

Neighbor

gene id symbol gene type direction distance location
LOC110537190 iscua coding upstream 3846 21760881 ~ 21768970 (+)
LOC110537189 LOC106568211 coding upstream 11321 21755294 ~ 21758765 (+)
LOC110537187 LOC106568201 coding upstream 17572 21730306 ~ 21752514 (+)
LOC110537186 LOC106568203 coding upstream 47653 21698762 ~ 21722433 (+)
LOC110537185 LOC106568207 coding upstream 77247 21685358 ~ 21692839 (+)
LOC110537192 LOC106568218 coding downstream 4147 21774434 ~ 21777732 (+)
LOC110537195 LOC106568209 coding downstream 26058 21796345 ~ 21805989 (+)
LOC110537193 idd coding downstream 35912 21806199 ~ 21826261 (+)
LOC110537199 LOC106568222 coding downstream 81831 21851548 ~ 21862294 (+)
LOC110537201 LOC106568226 coding downstream 125036 21895323 ~ 21936857 (+)
G1048388 NA non-coding upstream 36313 21733555 ~ 21733773 (+)
G1048268 NA non-coding upstream 43638 21723297 ~ 21726448 (+)
G1048385 NA non-coding upstream 50346 21719416 ~ 21719740 (+)
G1048384 NA non-coding upstream 50770 21719092 ~ 21719316 (+)
G1048407 NA non-coding downstream 15555 21785842 ~ 21786052 (+)
G1048377 NA non-coding downstream 57426 21827713 ~ 21828270 (+)
G1048419 LOC106568221 non-coding downstream 65439 21835726 ~ 21835994 (+)
G1048429 NA non-coding downstream 80501 21850788 ~ 21851359 (+)
LOC110537158 LOC106568186 other upstream 1078344 20667957 ~ 20694090 (+)
G1046929 NA other upstream 1258567 20509269 ~ 20511519 (+)
G1046823 NA other upstream 1476235 20282886 ~ 20293851 (+)
G1046724 NA other upstream 1622672 20144179 ~ 20147414 (+)
G1045418 NA other upstream 2804144 18965568 ~ 18965942 (+)
G1048417 LOC106568221 other downstream 62807 21833094 ~ 21834812 (+)
G1049502 NA other downstream 755654 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 958643 22728930 ~ 22737666 (+)
G1051534 NA other downstream 2407143 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 3582297 25352530 ~ 25719607 (+)

Expression


Co-expression Network