G1048377


Basic Information

Item Value
gene id G1048377
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21827713 ~ 21828270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1194718
accagttgaggacttgaggcgtctgtttctcaaactagacactaatgtacttgtcctcttgctcagttgtgcaccggggcttcccactcctctttctattctggttaaagcctgtttgctctgttctgtgaagtacacagcgttgtatgagagcttcagtttcttggcaatttctcgcaatagccttcatttctcagaacaaaaatatagtTTCTGAAGAAAGTACttagtttctggccattttgagcttgtaatcgaacccacaaatgctgatgctccagatttatttttattttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgccttgttcaggggcagaacgacagatccccgagctgtaccttgtcagctcggggatttgaacttgcaaccttccggttactagtccaacgctctaaccactcggctaccctgccgccccagatactcaactagtctaaagaaggcccgttttattgcttctttcctcagaacaatagttttcagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1194718 True 558 lncRNA 0.44 1 21827713 21828270

Neighbor

gene id symbol gene type direction distance location
LOC110537193 idd coding upstream 1452 21806199 ~ 21826261 (+)
LOC110537195 LOC106568209 coding upstream 21724 21796345 ~ 21805989 (+)
LOC110537192 LOC106568218 coding upstream 49981 21774434 ~ 21777732 (+)
LOC110537190 iscua coding upstream 61473 21760881 ~ 21768970 (+)
LOC110537189 LOC106568211 coding upstream 68948 21755294 ~ 21758765 (+)
LOC110537199 LOC106568222 coding downstream 23848 21851548 ~ 21862294 (+)
LOC110537201 LOC106568226 coding downstream 67053 21895323 ~ 21936857 (+)
LOC110536818 LOC106568230 coding downstream 200988 22029258 ~ 22038032 (+)
LOC110537207 LOC106568232 coding downstream 243691 22071961 ~ 22115724 (+)
LOC110537208 LOC106568233 coding downstream 294441 22122711 ~ 22133603 (+)
G1048407 NA non-coding upstream 41661 21785842 ~ 21786052 (+)
G1048399 NA non-coding upstream 57426 21770086 ~ 21770287 (+)
G1048388 NA non-coding upstream 93940 21733555 ~ 21733773 (+)
G1048268 NA non-coding upstream 101265 21723297 ~ 21726448 (+)
G1048419 LOC106568221 non-coding downstream 7456 21835726 ~ 21835994 (+)
G1048429 NA non-coding downstream 22518 21850788 ~ 21851359 (+)
G1048447 NA non-coding downstream 108674 21936944 ~ 21937162 (+)
G1048443 NA non-coding downstream 109045 21937315 ~ 21938200 (+)
LOC110537158 LOC106568186 other upstream 1135971 20667957 ~ 20694090 (+)
G1046929 NA other upstream 1316194 20509269 ~ 20511519 (+)
G1046823 NA other upstream 1533862 20282886 ~ 20293851 (+)
G1046724 NA other upstream 1680299 20144179 ~ 20147414 (+)
G1045418 NA other upstream 2861771 18965568 ~ 18965942 (+)
G1048417 LOC106568221 other downstream 4824 21833094 ~ 21834812 (+)
G1049502 NA other downstream 697671 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 900660 22728930 ~ 22737666 (+)
G1051534 NA other downstream 2349160 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 3524314 25352530 ~ 25719607 (+)

Expression


Co-expression Network