G1048417 (LOC106568221)


Basic Information

Item Value
gene id G1048417
gene name LOC106568221
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21833094 ~ 21834812 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1194759
AGGCCCCTCCTCCAGTAGGTGCTTGTTGCTGTTGAGGTATTTGATCTTGTCCTTCTTGTCAATCTTGTAGTAGCCCTCGCTACGGGCACAGCCAGTCATGTGATCCCTCATGCCAtcgtccctcctcttcctcttcaccgCCGGGATGTTGGTAGgaGGGTGCTGGACCCACAGCGTGTCGTTGAGCCAGTCGTTGCCGTTGTCCTGCTGCAGCATCTTGTCGTAGGTGACCTGCAGGTGCCGGATGTCCTCCTCATCGATGCCATCGTTCCAGATGTCGTACAGGATGGTCATCTCCTCAAACTCTGAGCGAGGAGAGTAGTGGGGCCACGGCGGTGTGGTCACGGGGGAGTGGCTGGCCAGCAGTAGCTCTTCCCACCCTCGCCGCACCTTACGGGCAGGCTTCTGCAAGTGCCCCTCTTCTTCATAGGGAAGGAACTGGTCGTCAGGGGGCAAAACCACATGCAGCTTTGTCTCCCCTTCCCTGAAGTCCAGGCCCACCGTGGATGAGTCTAGCCCAGCGCGGCTGGGGATGTCAGGAAGAGCGGCTGCAGCATCCATGTTTGCAGAGAACTCTCTGAGCTGGGCATCATGAGGCAACGATCGGGGCATGGAGGTGGGAGTCACCAAGAGCTCCATAAACTCAGTCTGAGGAGAGGTCAGTGCTGCAGCCTTTTTACTCTTGGGTCGCCCAGGCTTCCTCTTAGGTGGGGTTGCGTCAGGGGGCACGGGGAGGTCTAAGACTGGGACAGCAGGCAGGTCTTTTGGCAAGCTGGTTAAGGCCTCTCCCTGGAGGGAGTCGGGGGGCAGGGTCTGGTTGGTCAGGGTGCTGAGTGGAGGCTCCTTGAACAGTGGGCTTTCTGAAGAGGCTTTCCAGTGGATGGGCAGGCCAACAGCCAGGGCTGTGTGGTCTGGGAAGACAGGAGTGAAGGTCAGATCTCTGCCGGGGGTTCGGGGGATACCTGCACTCAGGACAGGAGACTGGGCAGGGTAGGAGAAGGGGCTGCCGGATATGCGGGGAGAGCTGAGGCTGGCCAGGCTGCTGCCAGTCAGAGGAGCATCACTGTCAGGTGTGACGGGCACGTTCTCTGTGCTATTCTGGGACTTATCCAGGCCCCTTGCCCGGACCATCAGGTCCCTGCCAGGAGTGCGGGGCACATCCTCGTCTGTGGACAGCCTGGCCCGAAATGAGAGGGGGAGGTCCGGCAGGGCGCTGGGAGGAGGCAGCAGGAGGGAGTGGCCCTCCATGGCCGGGGTAGGGGGAAGGTGCATAGATGGGACTACTAGGGATCTAGGGAGGGCTGTGTTGGGCTCCAGGGATGCAGGAGCTCCTCTACCTGGCGTACAGGGGAGATCCTCGTCCTCTGTGTGGGCCTTGGGTCGAGTGTCCTGGTCGCTGTCAGCCAGGGAGCCTGTTGGCGTGGGCGGCCGCAGGTTAGTAACATCGTCCTGGGGATCCATCTTAAATACAGGGATGGCGACTCCCAGGTCAATGTCTG

Function

NR:

description
histone-lysine N-methyltransferase SETD1B-A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1194759 True 1499 TUCP 0.61 2 21833094 21834812

Neighbor

gene id symbol gene type direction distance location
LOC110537193 idd coding upstream 6833 21806199 ~ 21826261 (+)
LOC110537195 LOC106568209 coding upstream 27105 21796345 ~ 21805989 (+)
LOC110537192 LOC106568218 coding upstream 55362 21774434 ~ 21777732 (+)
LOC110537190 iscua coding upstream 66854 21760881 ~ 21768970 (+)
LOC110537189 LOC106568211 coding upstream 74329 21755294 ~ 21758765 (+)
LOC110537199 LOC106568222 coding downstream 17306 21851548 ~ 21862294 (+)
LOC110537201 LOC106568226 coding downstream 60511 21895323 ~ 21936857 (+)
LOC110536818 LOC106568230 coding downstream 194446 22029258 ~ 22038032 (+)
LOC110537207 LOC106568232 coding downstream 237149 22071961 ~ 22115724 (+)
LOC110537208 LOC106568233 coding downstream 287899 22122711 ~ 22133603 (+)
G1048377 NA non-coding upstream 4824 21827713 ~ 21828270 (+)
G1048407 NA non-coding upstream 47042 21785842 ~ 21786052 (+)
G1048399 NA non-coding upstream 62807 21770086 ~ 21770287 (+)
G1048388 NA non-coding upstream 99321 21733555 ~ 21733773 (+)
G1048419 LOC106568221 non-coding downstream 914 21835726 ~ 21835994 (+)
G1048429 NA non-coding downstream 15976 21850788 ~ 21851359 (+)
G1048447 NA non-coding downstream 102132 21936944 ~ 21937162 (+)
G1048443 NA non-coding downstream 102503 21937315 ~ 21938200 (+)
LOC110537158 LOC106568186 other upstream 1141352 20667957 ~ 20694090 (+)
G1046929 NA other upstream 1321575 20509269 ~ 20511519 (+)
G1046823 NA other upstream 1539243 20282886 ~ 20293851 (+)
G1046724 NA other upstream 1685680 20144179 ~ 20147414 (+)
G1045418 NA other upstream 2867152 18965568 ~ 18965942 (+)
G1049502 NA other downstream 691129 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 894118 22728930 ~ 22737666 (+)
G1051534 NA other downstream 2342618 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 3517772 25352530 ~ 25719607 (+)
LOC110537260 LOC106567764 other downstream 3994949 25796348 ~ 25836166 (+)

Expression


Co-expression Network