G1048513


Basic Information

Item Value
gene id G1048513
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22041104 ~ 22043798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1194873
acatggaatgcaacgccATGTGCTTCACAGGAAAAACATACCttaaatatttactacacaataagaggataaaaaataaaagaataacaaaaactaaatgactaaaaatcactaaggaaaagcaaagctaaaaaggtgtgttttaagatctcttaAATATGTCCATAGTTTCAGCCCACTGAGGATCTCTGGCAGGctgttccagaggctgggggcatagtaactaaaggctgcctttccatgcctcttggtcctaggctttggaatagttaaaaggccagtaccagaggacctgagggacttactgggtacataacttaaaaagtatgtctgacatgtattggggtaCACAATTATGGATTGATTTAAAAAGCAATATAAGAATcttaaaatgtatttctaaaactcacaggcagccagtgcgGAGACCTTAAAACCAGTGTAATGTGTGCTATCCGTCTGGTCTTGGGCAGTACcagtgctgcagcattctgtatgttttgcagttgaccaatagctttcttgggtagaccaaaCAGGAGAGCACTaaagtagtcaagcctgcttataataaaagcatggacgagtctctctgtatcagcctgagagagaaatgGCCGCgccttggcaatgttcctcaggtggtagTATTTTCTCTGAGTTATGGGTCACAAAAAAGCTCAACCTGTCAAATAGGTCCTGAACCAATTTAGAATTGGACCTGAGAGGCCAAcccacctctccagtctgtccagaggacatcatggtcaacagtgttgaatgcAGCACCTAAATCCAAGAGTACAAGGACGgagagctgtttggcatctgtgttAGCGCTAAGATCATTTACCACCTTAACTaaggctgtctctgtgctgtagtgGGCACGAAAACCAGATTGGAATTTCTAAAATACAGTTGGCACTTGATACACAACTTTACATTtgtgtcaccagaggattttagctacacggataaattattagactgtattagtgatttaaatacttggattTCTtacaacttcctccagctaaatcaagacaaggCGCCAAACCACAGAGAGAATCTGGCCGCATATTTTAATTAAAGTGgaataaagataaaacaccagaTGAAAAGCTAGGTATTATTTTAGCTTTTAGCTGTGGAGGAAAGTTCGCAGGTTTGCTTGCAGGGGTAGGATTAAATCAGGCCATCAATGGTTGAGAAGATCACTCTAAATATTcagatttgtaccttgtcagctcagggatttgaacttgtaacctttcgtttactagtccaccgctctaaccactagcctaccctgcCACCCTGATCTTAGTGATCAAGTTAGAAAACGAGCTTGTCTGGAATTTCTAATTGCCTTGTTATACATGCCAAGTTTATTTGTCTCAAACACATAACCTCTTTTTATAAAATACATacccctccccatcttcacaacaactttgcCAATATGACTTGCCCATGATAATtgaccatccagtgttatacgtACTGTGCGTAGGAATTTagcttcctcaacttgctcaaagGTCACACCCTTTATGTacaactccagttgaggtttagggcTTAGAGAATgctttgaaccaaatacaatgcttttagtttgagatgtatttaagaccagtttattattattcacccattctaaaacTGCTTTTCTGTATATGCATGCTGAAAATCAGTAGTTAATTTGTTCTCTGAAaagtagcattgtatttggtcaaacacaattctcTCCACTCTCCAATAAGATTAGGCAGCAAACTGATTGGGTAGCTGTTAGAGTCAGCAAAGGGTGCTTTAGTATTATTAGGCAGTGGAACTCCTTTCTGACACTGAAGGGGGCTGCAAAAAGCCTGTTTTATCTCAAAGTGTGAGTCTCAGAGTATTGGTGCAACACTCCAGAGAGGGACTAATAAATGAACTTGGAGGATTGAGTTGTAACATGTTGTATCATGTCCTGTCCTGAATCTGACAAGTCCTTGTGGTCACAGTATGAGTCCCATGTTAGTACAGGCTGAAAGGCTGTACTGAACTTCTCTTCCCATTTGAGTTCCTTCGGGACCTCCCTTGTGCTATAATCTATGTGTACTGTACAGTTAGTCATTAAGAACAAGCATGTAATTGTATGGACTTGGTAAAATTAGAAACTCCATCCATTTCAGTGCCTAAGTATTTTGTCAAGAGGGCCATTTGATTCTGCTTAAGGCTCTGGACTGTTGGTTTAGATAAAAATGTTCATA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106632435

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1194873 True 2261 lncRNA 0.40 3 22041104 22043798

Neighbor

gene id symbol gene type direction distance location
LOC110536818 LOC106568230 coding upstream 3072 22029258 ~ 22038032 (+)
LOC110537201 LOC106568226 coding upstream 104247 21895323 ~ 21936857 (+)
LOC110537199 LOC106568222 coding upstream 178810 21851548 ~ 21862294 (+)
LOC110537193 idd coding upstream 214843 21806199 ~ 21826261 (+)
LOC110537195 LOC106568209 coding upstream 235115 21796345 ~ 21805989 (+)
LOC110537207 LOC106568232 coding downstream 28163 22071961 ~ 22115724 (+)
LOC110537208 LOC106568233 coding downstream 78913 22122711 ~ 22133603 (+)
LOC110537209 LOC106568235 coding downstream 107797 22151595 ~ 22157870 (+)
LOC110537210 LOC106568251 coding downstream 121632 22165430 ~ 22203378 (+)
LOC110537214 NA coding downstream 251189 22294987 ~ 22397615 (+)
G1048443 NA non-coding upstream 102904 21937315 ~ 21938200 (+)
G1048447 NA non-coding upstream 103942 21936944 ~ 21937162 (+)
G1048429 NA non-coding upstream 189745 21850788 ~ 21851359 (+)
G1048419 LOC106568221 non-coding upstream 205110 21835726 ~ 21835994 (+)
G1049249 LOC106568236 non-coding downstream 229220 22273018 ~ 22290074 (+)
G1049329 LOC106568238 non-coding downstream 445437 22489235 ~ 22490285 (+)
G1049482 NA non-coding downstream 471606 22515404 ~ 22515603 (+)
G1049490 NA non-coding downstream 476373 22520171 ~ 22520381 (+)
G1048417 LOC106568221 other upstream 206292 21833094 ~ 21834812 (+)
LOC110537158 LOC106568186 other upstream 1349362 20667957 ~ 20694090 (+)
G1046929 NA other upstream 1529585 20509269 ~ 20511519 (+)
G1046823 NA other upstream 1747253 20282886 ~ 20293851 (+)
G1046724 NA other upstream 1893690 20144179 ~ 20147414 (+)
G1049502 NA other downstream 482143 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 685132 22728930 ~ 22737666 (+)
G1051534 NA other downstream 2133632 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 3308786 25352530 ~ 25719607 (+)
LOC110537260 LOC106567764 other downstream 3785963 25796348 ~ 25836166 (+)

Expression


Co-expression Network