Gene
RNA
| Item | Value |
|---|---|
| gene id | G1049629 |
| gene name | LOC106456187 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 22728930 ~ 22737666 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| protocadherin alpha-2-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1196129 | True | 2553 | TUCP | 0.42 | 2 | 22728930 | 22737666 |
22,720,000
22,722,000
22,724,000
22,726,000
22,728,000
22,730,000
22,732,000
22,734,000
22,736,000
22,738,000
22,740,000
22,742,000
NC_048576.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cbln17 | LOC106568124 | coding | upstream | 161997 | 22560486 ~ 22566933 (+) |
| LOC110537216 | bmp1 | coding | upstream | 248948 | 22426629 ~ 22479982 (+) |
| LOC110539131 | LOC106568265 | coding | upstream | 311242 | 22405932 ~ 22417688 (+) |
| LOC110537214 | NA | coding | upstream | 331315 | 22294987 ~ 22397615 (+) |
| LOC110537210 | LOC106568251 | coding | upstream | 525552 | 22165430 ~ 22203378 (+) |
| LOC118937650 | NA | coding | downstream | 40902 | 22778568 ~ 22783781 (+) |
| LOC110536821 | LOC106568123 | coding | downstream | 76582 | 22814248 ~ 22821144 (+) |
| LOC118937878 | avr3 | coding | downstream | 152409 | 22890075 ~ 22891363 (+) |
| LOC110537228 | avr3 | coding | downstream | 164534 | 22902200 ~ 22903466 (+) |
| LOC110539134 | avr3 | coding | downstream | 180093 | 22917759 ~ 22919034 (+) |
| G1049602 | NA | non-coding | upstream | 41454 | 22687251 ~ 22687476 (+) |
| G1049599 | NA | non-coding | upstream | 46995 | 22681700 ~ 22681935 (+) |
| G1049597 | NA | non-coding | upstream | 48336 | 22680345 ~ 22680594 (+) |
| G1049584 | NA | non-coding | upstream | 58287 | 22669178 ~ 22670643 (+) |
| G1049554 | NA | non-coding | upstream | 118746 | 22607899 ~ 22610184 (+) |
| G1049631 | NA | non-coding | downstream | 536 | 22738202 ~ 22748988 (+) |
| G1049781 | NA | non-coding | downstream | 73357 | 22811023 ~ 22811240 (+) |
| G1049802 | LOC106568098 | non-coding | downstream | 124646 | 22862312 ~ 22866500 (+) |
| G1050037 | NA | non-coding | downstream | 505898 | 23243564 ~ 23244319 (+) |
| G1050041 | NA | non-coding | downstream | 510865 | 23248531 ~ 23248759 (+) |
| G1049502 | NA | other | upstream | 202698 | 22525941 ~ 22526232 (+) |
| G1048417 | LOC106568221 | other | upstream | 894118 | 21833094 ~ 21834812 (+) |
| LOC110537158 | LOC106568186 | other | upstream | 2037188 | 20667957 ~ 20694090 (+) |
| G1046929 | NA | other | upstream | 2217411 | 20509269 ~ 20511519 (+) |
| G1046823 | NA | other | upstream | 2435079 | 20282886 ~ 20293851 (+) |
| G1051534 | NA | other | downstream | 1439764 | 24177430 ~ 24177934 (+) |
| LOC110537258 | msi2h | other | downstream | 2614918 | 25352530 ~ 25719607 (+) |
| LOC110537260 | LOC106567764 | other | downstream | 3092095 | 25796348 ~ 25836166 (+) |
| G1052922 | LOC106567769 | other | downstream | 3159866 | 25897532 ~ 25899724 (+) |
| G1052923 | NA | other | downstream | 3164653 | 25902319 ~ 25905315 (+) |
