G1049629 (LOC106456187)


Basic Information

Item Value
gene id G1049629
gene name LOC106456187
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22728930 ~ 22737666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1196129
CCTCATTCTAACAGATCCAGTACTTATTGTGAATAGTGAAAAAGGCTTACCTTCTCACTACTAGGAAGCGTTCGTGTCCTTTGAAAAGTATCCCCGCCATTAATGCTGATCAGCTCCCCATCAGCAGATGAAAACGGAGTGGGGAAAACTACTACGTCACTCTTCAGTGTGTCAGAGCTGAAACACACGTCATACTGCTGAGTAGATTTGGAGTAAGACCAGCTCCCGTCAGGGTGTGTGGTGATCATTGGGGCGCTGCACCTGCTGAAACTGCCGTCTGTCCTGTGGCATTTTACAACTATTAAACTGATGAGTATCAGTAGAAATATCACTGATACTGACACAATGGCGACGAGCAGATACAGATTTAAATCTGAGAAACTCTCCTCCTTTACAGGCAGTTGTCTGAAAGTTGTCTGTGTGTCATCTGTACTTTCAACGACCATAACATCAATAGACACAGTCGCAGACAGGGAAGGTTCTCCATTATCAGACACCAGAATGACCAACGGGTGAGTTTTTAGGTCATTGTCACTCATGCGTCTCTTAGTCCGTATTTCTCCGTTGCTAGTTCCAATTCTGAATAGATTGGTCCCCTTTGGTTCAGAGATGTGATAAGAAAGCAGCGCATTATAACCAGAATCGGCGTCTACAGCCCTGATCTTGGCCACAAAGTATCCCGCTTCAGCAGAATAAGGAATGTTCTCAGAATTAACGGAGCCGTGGTCAGAATAGGGCGGGAGAATCACAGGACTGTTGTCATTCTCGTCAAGGATAAAAACGTTGACAGTGACGTTGCTGCTTAATGGAAGAACACCAGAATCTGTGGCCTGAACTTGAAATTGTAACTTTTTTACTTCTTCATAGTTAAAAGACTGCATGCTATATATCTCACCAGTTAAGGAGTTTATGTTTATCATTGTAGACAAGGGTATTGCATTATTGCCTTCTAAAAATGAATAAGACATCTGAGCATTTTCATTTATGTCTAAATCATTCGCAGTCAAGCTGGCAATATGACCTCCCACTGGGCTGTTTTCTTTTAAATTCACCATTACGGTCTCTGAAAAGCGAGGCGCATTGTCATTCACATCAGAAATGTGCACACTAATTACTCGAGTGCTGGAGAGAGGTGGGGATCCTTCATCTGTTGCAACAATGGTTACATTGTACATTGAAACAAGTTCTCTGTCTAGTGGCCCATCAACTAATACAGAATAGTAATTATTATATGAAGACTGCAACTTGAAAGGACCAGAACCTGCAATGTTACACTGAACTACTCCATTCTTACCCCCATCTTTGTCACTGACTGTGACTAAGGCAACAGCTGTGCCTGTTTTCACATCCTCGCGAATAGTGTCAATGAGTGACGTCACTGATATTTCTGGAGTGTTATCATTCTCATCAATAACTTCAACTAAGACTTTACAACGTGTACTCCTAGGTGGAATACCCTTGTCTTTTGCTTGGACTCTTAACTCAATTGCAGCATTTTGTTCATGGTCAATCACTCCCTTTACCTCAATCACCCCTGTCTCAGGAACGATAGAGAATAGAGCTTCGTTTTCAGGCCCATATCCAACTAGAGAATATATTACTTCACCATTTATTCCTTCATCTATATCCGAAGCAAGAAGAGAAGTTACTTTTTTTCCTACCGGCGAATTTTCATTCACTTTCACTTTGTAGAGAGGTTTGCTGAAAATTGGATTATTGTCATTTATATCCATAACGTTTACCACAATCTGTAACGTCCCTGATCGAGGAGGGTTTCCTCCATCAACAGCAGTCAGTGTCAGCTGGATCACAGCCTGTTTCTCTCGGTCTAAAGCTTTCTTTAGCACTAATTCCGCAGACACACTCTGCTCTCCACCGCTCTGTACATCCAGAGAGAAGTGTTCATTTGGACTCAGCTTGTAGCTTTTTACCGCGTTACTACCAACATCTGGATCTTTTGCAATGGGTAAGAGGAATTTGTCTCCCAAAATAGCTATCTCTGTAATATTCATTGTAAGTGTATTACCTGAGAAAAATGGCGCGTTGTCATTTGTATCCAAAATCTCTATCTCGATCCGATAAAGACTATGCGGGTTTTGTGCTAGGGCCTCTAAATTTAAGGCACAAGTCTTGCTCGTCACACATAGGTCTTCTCGATCGATTCTCTCAATCACAAACAGAGCACCAGTCTTAACATTCACATCAAAATACTTCTGGTTAGATCCGGCTACAATCTGAAACATACGAGACTCCAATTCCTGAACATTGAGATTGAGGTCCTTGGCTATATTCCCAACAACGGTTCCCTTGTTCACCTCCTCTGAGACAGAATAGACAATCTGGCCGGATGATAAATTCCAGAAACAAAGAAGAAGCAGAATTCGAATAAAAATACATGCATGGAGAAAGAGGCCCATCGTTATCCACGGTTCAGTTGTTTGTGCCAAACATCGATAAGTAGATTCTGAAAGTAGTGTTATCTACCATAAAAACATTAGACATAAAACGCCCAAAACGCAGTGAGAATGCTTTCTTGTATAAAACACAAACCGA

Function

NR:

description
protocadherin alpha-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1196129 True 2553 TUCP 0.42 2 22728930 22737666

Neighbor

gene id symbol gene type direction distance location
cbln17 LOC106568124 coding upstream 161997 22560486 ~ 22566933 (+)
LOC110537216 bmp1 coding upstream 248948 22426629 ~ 22479982 (+)
LOC110539131 LOC106568265 coding upstream 311242 22405932 ~ 22417688 (+)
LOC110537214 NA coding upstream 331315 22294987 ~ 22397615 (+)
LOC110537210 LOC106568251 coding upstream 525552 22165430 ~ 22203378 (+)
LOC118937650 NA coding downstream 40902 22778568 ~ 22783781 (+)
LOC110536821 LOC106568123 coding downstream 76582 22814248 ~ 22821144 (+)
LOC118937878 avr3 coding downstream 152409 22890075 ~ 22891363 (+)
LOC110537228 avr3 coding downstream 164534 22902200 ~ 22903466 (+)
LOC110539134 avr3 coding downstream 180093 22917759 ~ 22919034 (+)
G1049602 NA non-coding upstream 41454 22687251 ~ 22687476 (+)
G1049599 NA non-coding upstream 46995 22681700 ~ 22681935 (+)
G1049597 NA non-coding upstream 48336 22680345 ~ 22680594 (+)
G1049584 NA non-coding upstream 58287 22669178 ~ 22670643 (+)
G1049554 NA non-coding upstream 118746 22607899 ~ 22610184 (+)
G1049631 NA non-coding downstream 536 22738202 ~ 22748988 (+)
G1049781 NA non-coding downstream 73357 22811023 ~ 22811240 (+)
G1049802 LOC106568098 non-coding downstream 124646 22862312 ~ 22866500 (+)
G1050037 NA non-coding downstream 505898 23243564 ~ 23244319 (+)
G1050041 NA non-coding downstream 510865 23248531 ~ 23248759 (+)
G1049502 NA other upstream 202698 22525941 ~ 22526232 (+)
G1048417 LOC106568221 other upstream 894118 21833094 ~ 21834812 (+)
LOC110537158 LOC106568186 other upstream 2037188 20667957 ~ 20694090 (+)
G1046929 NA other upstream 2217411 20509269 ~ 20511519 (+)
G1046823 NA other upstream 2435079 20282886 ~ 20293851 (+)
G1051534 NA other downstream 1439764 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 2614918 25352530 ~ 25719607 (+)
LOC110537260 LOC106567764 other downstream 3092095 25796348 ~ 25836166 (+)
G1052922 LOC106567769 other downstream 3159866 25897532 ~ 25899724 (+)
G1052923 NA other downstream 3164653 25902319 ~ 25905315 (+)

Expression


Co-expression Network