G1052073


Basic Information

Item Value
gene id G1052073
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 24589930 ~ 24592772 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1198770
aaacagcagtttattttgtatttacggatagccaggggcacactacaacactcagacataaaatacaaacaaagcatgtgtgtttagtgagtctgccagagatcagaggcagtagatggcaagggatgttctcttgaagtATGTGaactggaccattttcctgtcctgctaagcatccaaaatgtaacgagtacttttgggtgtcagggaacatgtatggagtagaaagtacattagttgccaaaaatataaatagtaaagtacagataccccaaaacactacttaagtagtactttaaagtatttttacaccactggttatTAAACTATATAAAATGACAGTTGTTGTGTATGCTCCATTTCAGATACTTTGTACATTTGAATGTTGTAGTAATAGGACCTAGGCCTAGAGGTTGAATGAGCaaacaaacatttttttaataGCAAACACCGATCCCAATGACTCCACGGAGAGAAAGAACTGCGGATCAATAATTAACAAAATTACAGTGAACATTTTAAAACACACTTGTAATACTGACTGTACAACTCCAGTGTACAGTACCTAGTTATCTTTAACATGATTGCCATTTAATAAATTAGTCACCTATAGGTTTCACATTTTCAACAAAAACAAATACAGAAAAACAAATtttgaacatgtttttttttggcTGGAATAAGCTTCAATAATTGCCAAAAATATACCCCACGGTAGAAAACTATTCATTCTTAACCATTATGGCAACAATTACCATTGATAGTGTTTGCTTCTGTGTCAGACTTTGTATACTACAGAGCAAGCTGTGCTGCACTAAAGCCTGATGTAAGTAATAGAACAGTAAGGTGTATTCAAAGCActcactaccctGGGTTTTATCAGTAAATAAGTGCTCCCTCCAAAAGTTCCAATCTGCTGGCATTTTATTTTCAAGATAACCATCAAAACACCCCAAAACCCAATGCATGTTTTCCTGTCCTATAGGACAAAGGCTCTTTATGATTGCAAATGGATGAAGAGCTGCTTCCACTTTGGGTGGCCTCATTTTCAAATTGCACTTACATATACtagatacactgagtgtacaaaacatgaacacCTGCTttatccatgacagactgaccacgtgaaagctacagtatgatgagttattgatgtcacttgttaaatccacttcaatcagtgtagataaaggggaggagacaggttaaagaaggatttttaagccttgagacaattgagacatggactgtgtatgagtgccattcagaaggtgaatgggcaagacaaaatatttaagtgcctttgaacgggctaTCGTAGGTGTCaagtgcaccggtttgagtgtgtcaagaactgcaatgctgctgggtttttcatgctcaacagtttcccgtgtgtatcaagaatggtccaccacccaaaggacatccagccaacttgacaactgttgcaaacattggaatcaacatggcccagcatccctgtggaatgctttcaacaccttgtagagtccatgccccaacaaattgaggctattctcagggcaaaaggggttgcaactcaatattaggaaggagtTTATCAACACAAACACATTCTGTAAGACTTGTGTAAATTCATTACCCTGGACATCAGTCCCCCCTCCCTCCAGAATCATTGCCAACAGTTTCATCAGTAACAGCACAAACTCATTGGCTCCTCCAACCCCAGTTTCCAACACAGTTCCTCCACAGGGGCAGTGCCAGGGTGCAGTGCACTGGAGACAGTGGGGCCAGGAAGAGAGGCCCTCTAGGTTTATAACTGGTGCAAACATGAGTCCTTTGTCCAGATCATATTCACATTCTGATTACGCCCACATTGCCTCTGATTAAtacccttttatttttttaaaaccacTGACTCTTGCATACTCACACACTGGTGATACGCTTATCTTTCCTGATTGCTTCAACTACCTCAtatccctgcacatcgactcagtactacTTGTATTTAGCCTCAATATTTTTAATTGATTGCGTTTTTAATACCTTATTTTATTTCTCTAATTTCTTACTTTTTAAATTCTGCATTGCTGGGAAAAGGctcgtaagtaagcgtttcacagtaaagtctacacctgttgtattcagagcatgtgacaTATAATTTGATCTACACATGGTAGTAAAATGTCTCTTATCCACCAACCATTGTGACCAGATTTCCTAGTGCCTCCCTGTATACAAATCATGTGACAGATATtctttcaaaatatatatattttttgtaagaCAATTATTGATGCCATTAGTCAATGGAGCTACCCGTCAATGGTTTTAGAGACCGGTATAATGATTTAAATGGATTGACCATCCTGATCTGTTTACAATGGGTCCGTGACTAACTCCGGAGGTGGTCAGGAAGATATGATCACAAAAATCTATACCTTTCTAAAAATGTGAACAagatcagaatgtggacaagatcaagacaaaggacgcatgttagaaccaggtataaatgaGGCTTAGGTGGCAGCCGGTGCAGCATCCATGGTAGACAGGATGCGCACCACCTCAGCACGCTGTGTtggggagatgtgttgggtcatatgcACGATGGAATCCATGGCAACCTCAGGATTGGCTTGGA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1198770 True 2638 lncRNA 0.40 3 24589930 24592772

Neighbor

gene id symbol gene type direction distance location
LOC110537235 LOC106568090 coding downstream 467869 24095480 ~ 24122061 (-)
LOC110537234 LOC106568091 coding downstream 499836 24062473 ~ 24090094 (-)
LOC110537233 LOC106568122 coding downstream 531467 24049874 ~ 24058463 (-)
LOC110537232 LOC106568092 coding downstream 543566 24025374 ~ 24046364 (-)
LOC110537230 LOC106568094 coding downstream 638186 23719098 ~ 23951744 (-)
LOC118936414 NA coding upstream 7537 24600309 ~ 24607820 (-)
LOC110537239 aatf coding upstream 15474 24608246 ~ 24617116 (-)
LOC110537240 lhx1 coding upstream 24411 24617118 ~ 24623412 (-)
mrm1 mrm1 coding upstream 127612 24720384 ~ 24725396 (-)
LOC110536825 LOC106603276 coding upstream 135227 24727999 ~ 24730374 (-)
G1052054 NA non-coding downstream 18910 24570804 ~ 24571020 (-)
G1052041 LOC104950802 non-coding downstream 34548 24555138 ~ 24555382 (-)
G1052039 NA non-coding downstream 35997 24553644 ~ 24553933 (-)
G1052038 NA non-coding downstream 36300 24553419 ~ 24553630 (-)
G1052025 NA non-coding downstream 57494 24532112 ~ 24532436 (-)
G1052080 NA non-coding upstream 5095 24597867 ~ 24598128 (-)
G1052113 NA non-coding upstream 37965 24630737 ~ 24633618 (-)
G1052040 acaca other downstream 34930 24554697 ~ 24555000 (-)
G1050429 NA other downstream 1345660 23243637 ~ 23244270 (-)
G1049722 NA other downstream 1900333 22689161 ~ 22689597 (-)
LOC110536820 LOC106603249 other downstream 1948331 22607858 ~ 22654480 (-)
LOC110537218 LOC106568105 other downstream 2043273 22540032 ~ 22546807 (-)
G1054211 NA other upstream 1031107 25623879 ~ 25624637 (-)
G1054232 NA other upstream 1064497 25657269 ~ 25659005 (-)
G1055010 NA other upstream 2388011 26980783 ~ 26982355 (-)
G1055199 NA other upstream 2552438 27145210 ~ 27145493 (-)

Expression


Co-expression Network