G1052922 (LOC106567769)


Basic Information

Item Value
gene id G1052922
gene name LOC106567769
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 25897532 ~ 25899724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1199707
CAGGAAGTCTTATGTTTTCATCGCCACACTGCAAGAGCCATCGACATAGTAATCTTTTCTAGAAAATATTGCCTGTGTCATTCAGTTAAACCAAAAATGGATAACTATAATAAGCAATCTTTGAACTCAATGCCAGGTCCTGTTCCAGATTTCAGAGGGAATGATGGATCATTGGTGTCTGTACTGAAGACATTGCTGTTTTTCACGGTCATGATGATAACCCTGCCAATAGGATTATATTTTACATCAAAATCATATATTTTTGAAGCTTCTGGGTATTCCAGCAATGACAGTTATTTCTATGCTGCCATCGTGGCAGTGATAGCTGTCCATGTGGTCTTGGCCCTCTTTGTGTATGTTGCATGGAATGAGGGCACCGGCTCACATCAGACAAGAGAAGGAAAGCAGGACTAGGAGGATCAGGCTGTGTGTGGACCAGAAGAGGGTGACCacatcactaccaccacacacagagaagacAGTGAGGCTACAGCCTAGAGCCCACTGATGCAGTGCAATAGTGGATGGTTGATGTTCAGGATTTATATGCTTGGAGAGGCACGAAAGTATGCAATGTGGTGTTCAGGCATAAGAATATGCAGCAATTGCTCAATGAGTTTGTCCAGTTTCAGCAGTTAAAAAATTAGGGACAACTATTTTTAAGACATGGGGCCCTATTAAATCTAACCTGGTAACAGGGCTTTGGGGATAGGTTTTCTTAGGGAAGAGGATTATATTTTGGTGTATTGCCGTATGCCATTAAGGTAATCAATCATCATTCAGTCATTGTTTTGAATCTAAATACTTGATAAACATCTGTAGGTATCAACCTAATATGAACACCTGTGGCTTCGCATCATCGGAGGTTAGATTgtatcaaaataaaaaataatggatAAAATAGATGGCTGATGATAAGTCTTAATGTCATATACCACAAATCTATCTTCActtcatctgtttttttttaaactttagaatgcattttttttttctcactgaTTCCTTCAAATGTGATATGCACATTCTAGTTTGTTGAACTCCCAAGGCTCTTTTTGACAGAATACAACATGTGACAATGTTTGTTTTCACCCAATTTGATAGAATTCATAATGATACGTGAAATACCCATGATGGCGTTTTTATTGATCATGCTTGCAGAGACCTCCACCCTGGGTCTCTTTCTGTAAGCTTGTCTCaacaaaaaatacattcaaaCTGACACCATGAACGTGTGCTGTCAGGGTTTGACAATTGGATGAAATTGAATAGTCATTGGGGGAAAACAACGGGTTGTTCAATAAAGCATTCATCTCTGATTTGTGGTTCAAGAATTATAACAAAAATGTTTTCAATTCACACAGCAAATACTTACTGGAAAAACAAGAAAGAATGAAGGTCTTGACTTAATGACAGGCAGC
>TU1199708
CAGGAAGTCTTATGTTTTCATCGCCACACTGCAAGAGCCATCGACATAGTAATCTTTTCTAGAAAATATTGCCTGTGTCATTCAGTTAAACCAAAAATGGATAACTATAATAAGCAATCTTTGAACTCAATGCCAGGTCCTGTTCCAGATTTCAGAGGGAATGATGGATCATTGGTGTCTGTACTGAAGACATTGCTGTTTTTCACGGTCATGATGATAACCCTGCCAATAGGATTATATTTTACATCAAAATCATATATTTTTGAAGCTTCTGGGTATTCCAGCAATGACAGTTATTTCTATGCTGCCATCGTGGCAGTGATAGCTGTCCATGTGGTCTTGGCCCTCTTTGTGTATGTTGCATGGAATGAGGGCACCGGCTCACATCAGACAAGAGAAGGAAAGCAGGACTAGGAGGATCAGGCTGTGTGTGGACCAGAAGAGGGTGACCacatcactaccaccacacacagagaagacAGTGAGGCTACAGCCTAGAGCCCACTGATGCAGTGCAATAGTGGATGGTTGATGTTCAGGATTTATATGCTTGGAGAGGCACGAAAGTATGCAATGTGGTGTTCAGGCATAAGAATATGCAGCAATTGCTCAATGAGTTTGTCCAGTTTCAGCAGTTAAAAAATTAGGGACAACTATTTTTAAGACATGGGGCCCTATTAAATCTAACCTGGTAACAGGGCTTTGGGGATAGGTTTTCTTAGGGAAGAGGATTATATTTTGGTGTATTGCCGTATGCCATTAAGGTAATCAATCATCATTCAGTCATTGTTTTGAATCTAAATACTTGATAAACATCTGTAGGTATCAACCTAATATGAACACCTGTGGCTTCGCATCATCGGAGGTTAGATTgtatcaaaataaaaaataatggatAAAATAGATGGCTGATGATAAGTCTTAATGTCATATACCACAAATCTATCTTCActtcatctgtttttttttaaactttagaatgcattttttttttctcactgaTTCCTTCAAATGTGATATGCACATTCTAGTTTGTTGAACTCCCAAGGCTCTTTTTGACAGAATACAACATGTGACAATGTTTGTTTTCACCCAATTTGATAGAATTCATAATGATACGTGAAATACCCATGATGGCGTTTTTATTGATCATGCTTGCAGAGACCTCCACCCTGGGTCTCTTTCTGTAAGCTTGTCTCaacaaaaaatacattcaaaCTGACACCATGAACGTGTGCTGTCAGGGTTTGACAATTGGATGAAATTGAATAGTCATTGGGGGAAAACAACGGGTTGTTCAATAAAGCATTCATCTCTGATTTGTGGTTCAAGAATTATAACAAAAATGTTTTCAATTCACACAGCAAATACTTACTGGAAAAACAAGAAAGAATGAAGGTCTTGACTTAATGACAGGCAGCAAACCAAGAGTTTAAAAACATGGAAATTAAAGACAATCATGGAAACCTTGA

Function

NR:

description
vacuolar ATPase assembly integral membrane protein VMA21

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1199707 False 1421 TUCP 0.38 3 25897532 25899673
TU1199708 True 1472 TUCP 0.38 3 25897532 25899724

Neighbor

gene id symbol gene type direction distance location
LOC110536827 NA coding upstream 59978 25836349 ~ 25837554 (+)
LOC110537260 LOC106567764 coding upstream 61366 25796348 ~ 25836166 (+)
LOC110537258 msi2h coding upstream 177925 25352530 ~ 25719607 (+)
LOC110537256 LOC106567763 coding upstream 551128 25327761 ~ 25346404 (+)
LOC110537252 LOC106567758 coding upstream 582165 25252359 ~ 25315367 (+)
npas2 LOC106567770 coding downstream 12340 25912064 ~ 25986551 (+)
LOC118937880 NA coding downstream 97454 25997178 ~ 25998254 (+)
rnf128a rn128 coding downstream 119260 26018984 ~ 26050356 (+)
LOC110537270 LOC106567772 coding downstream 159628 26059352 ~ 26074860 (+)
LOC110537271 LOC106567773 coding downstream 176669 26076393 ~ 26098034 (+)
G1052921 NA non-coding upstream 1177 25896146 ~ 25896355 (+)
LOC110536829 NA non-coding upstream 2059 25892765 ~ 25897580 (+)
G1052919 NA non-coding upstream 3788 25893490 ~ 25893744 (+)
G1052915 NA non-coding upstream 7758 25889057 ~ 25889774 (+)
G1052916 LOC106567768 non-coding upstream 10577 25885955 ~ 25886955 (+)
G1052925 NA non-coding downstream 360 25900084 ~ 25900780 (+)
G1052924 NA non-coding downstream 7615 25907339 ~ 25909540 (+)
G1052998 NA non-coding downstream 156357 26056081 ~ 26056427 (+)
G1053010 NA non-coding downstream 205620 26105344 ~ 26105653 (+)
G1052984 cxb1 non-coding downstream 207948 26107672 ~ 26111650 (+)
G1051534 NA other upstream 1719598 24177430 ~ 24177934 (+)
G1049629 LOC106456187 other upstream 3159866 22728930 ~ 22737666 (+)
G1049502 NA other upstream 3371300 22525941 ~ 22526232 (+)
G1052923 NA other downstream 2595 25902319 ~ 25905315 (+)
G1055498 LOC106568053 other downstream 1661647 27561371 ~ 27562671 (+)
hmgn7 LOC106567806 other downstream 1669630 27569334 ~ 27572548 (+)
LOC110536832 LOC106567811 other downstream 1811695 27711313 ~ 27715011 (+)
LOC110537316 LOC106567813 other downstream 1834831 27724763 ~ 27737547 (+)

Expression

G1052922(LOC106567769) Expression in all Baseline Samples

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Co-expression Network