G1054466 (LOC106567773)


Basic Information

Item Value
gene id G1054466
gene name LOC106567773
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 26077471 ~ 26078509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1201404
GCTGGGCCCAGGATGATAGTGGGGACATACCGCCCCCCACAGGCTGTTCTTTCTCACTCTTTTTCTCTGCTGTGCCCTCTACCTTTGGCACCAATCCATAGAATGATAAGGCTTCCTCTTTGCCTGGACCATCCTCAGAGTGTGAGCTCTCTACGCTGACTATAGAAGGCATATTTGGATCAACTTCATCTTGAACAGATGCAGTGGGATCTTCATGCACTATGTCCATttgctcctctcctgtctctggcATCTTTGTCCCAGTTACAGTCGAAGTTCCCTCGGTGACCTCCAGTCTGTCTGTTCCAGGCTCAGCTCCCATTTCTGACCAGGCTTCTGTGTGACCCTGCCTGCCCCACTCATCCTGACTGAGGCCTGTGGCTGAACCGGAGGGCTCTTGGAAGTCTGAGTGTTCTGGCAGGCCTGTGGGCTCTGAGGGTTTTGAAAGGTATGAGGGTTCTGGATAGACTGAGGACTCTGAGAAGCCTGAAGGTTCTTGAAGGTATGAGGATTCTGGAAGGACGGAAGGTTCTGGAAGGACAGAGGGCATTGGAAAGACTGAGGGTTCCTGAAAGTCTGATGGTTCTGGAAGGACTGTGCGGCTGTAAAAGTCCTCCACCTGGACTTTGGACAGTTCCAGTGAGTCTGGGTCCCCCAGGATGCTCAGACTGTCCTGAGTTTTCAGCCTCTCTCTTTCAGATTGGGTGAGAAAGGTTGTCAACTCGTCAATGGCCTGCTGCTCCCCACTGTGTCCCTCTGTTCCCAGTGAGCCAGAGTAGGCCACCTCCATATCAGTCTGTGCAGGCTGCAGGTCCATATCATTCTGTGCAGACAGTAGGTCTACATCAGTCTGAGCAGGCAGCAGGCCCATATCAGTGTGCCCAGAAAACAGGTCCATATCAGTCTGTGTGGATAGCAGGTCTAGATGTACATTCTCATTGGCCATTTGAAAAGTGGCTGAGGTTTCTGGATGCTCTGAGGGTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1201404 True 985 lncRNA 0.52 2 26077471 26078509

Neighbor

gene id symbol gene type direction distance location
zgc:113208 LOC106567768 coding downstream 187672 25885945 ~ 25889799 (-)
LOC110537265 LOC106567767 coding downstream 196035 25876456 ~ 25881436 (-)
aifm1 aifm1 coding downstream 205277 25854329 ~ 25872194 (-)
LOC110536828 LOC106568049 coding downstream 223188 25842092 ~ 25854283 (-)
LOC110537261 LOC106567765 coding downstream 279852 25791364 ~ 25797619 (-)
trnav-uac-17 NA coding upstream 18070 26096579 ~ 26096654 (-)
LOC110537272 LOC106567774 coding upstream 21101 26099610 ~ 26106362 (-)
LOC110537274 cxb1 coding upstream 31192 26109701 ~ 26113353 (-)
igbp1 LOC106567775 coding upstream 35027 26113536 ~ 26116579 (-)
wnt11f2 LOC106568050 coding upstream 57287 26135796 ~ 26138363 (-)
G1054394 NA non-coding downstream 83318 25985418 ~ 25994153 (-)
G1054419 NA non-coding downstream 98643 25977868 ~ 25978828 (-)
G1054363 NA non-coding downstream 167591 25909631 ~ 25909880 (-)
G1054358 NA non-coding downstream 186775 25890425 ~ 25890696 (-)
G1054323 NA non-coding downstream 187095 25889966 ~ 25890376 (-)
G1054474 LOC106567773 non-coding upstream 6565 26085074 ~ 26086195 (-)
G1054490 NA non-coding upstream 50575 26129084 ~ 26157521 (-)
G1054509 NA non-coding upstream 96540 26175049 ~ 26175286 (-)
G1054684 NA non-coding upstream 333978 26412487 ~ 26416866 (-)
G1054232 NA other downstream 418466 25657269 ~ 25659005 (-)
G1054211 NA other downstream 452834 25623879 ~ 25624637 (-)
LOC118936414 NA other downstream 1469651 24600309 ~ 24607820 (-)
G1052040 acaca other downstream 1522471 24554697 ~ 24555000 (-)
G1050429 NA other downstream 2833201 23243637 ~ 23244270 (-)
G1055010 NA other upstream 902274 26980783 ~ 26982355 (-)
G1055199 NA other upstream 1066701 27145210 ~ 27145493 (-)
G1056225 NA other upstream 1899517 27978026 ~ 27978436 (-)
G1057449 LOC106567827 other upstream 2097877 28176386 ~ 28177073 (-)
G1057600 NA other upstream 2362760 28441269 ~ 28441695 (-)

Expression


Co-expression Network