G1054684


Basic Information

Item Value
gene id G1054684
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 26412487 ~ 26416866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1201638
GCAATATCAGGATTTCAAACTTGGCTCATGGAATTTCCATTCCATAGTAACTGGTTATGTTGAACGTGGGTTGAAGCTGTGTGTGAATGAAAGGCGAAATATATGAACATGGAGCAGacgcaaaaaataataattcactGGGATTGCATACATGTACATTGAAAATAATACTGAATCATGAACAGAAATAAAACAATGACAATAATGACTTACTGAGGGCAGGGAAAGTGAGCAACCAGCCACACTGAACAAGTCATTAGTGTTTAAACTGTATTGAGCAGGAAAACCAAACCaaataatgtagatattttccTTCTTACTCCAATAGCATGGAGATGTTCACACACTTCAGCTTTCAGGTTGCTAAGCACTGCTGTAATATTTTTCAACTATGCGAGTGGCCTGGCCTCCATACACAGCACAGCAGAGGTGGGCTGAATTTGGCTGTGTGGCTGATGGCTGAGGAAATGTCTGGGGCTTGAGCTGCTTTCTCATTACAGCGAGCCAGAGATAATATCGTGATAATCTGTGGAGGTCAAGAGAGCGTGTCCATTTCACCTTGAGGGGTGTCGAAGGACTGAGATAGAGCCATGTATGTTGGCCTTATTTATTTCCCAAAGTCGCAAGCTCAGCAGACCTCCTCCAAGCACGATGCTTCTTATTCACCTTGGATTCTCACGACTAGAGATGGAATTACTGTATCCTTAGTCAGTGAGACCATACAGAGTTCAGGGAAACTTGCATGGAAAGATGCCCGGAATAATGTATTGCTCATCTGACTATTTCTAATCAGCatgggtaaaacatttttttttttacctttgtaGCATCGTATTATACTCAGACTCATCTTGATCAAAACATCAAGGCATCAAGTATTTAGTTGGTTGCTCACCATACCCTGTTTTTAAGATCACTAACATATCCATCGATTTTAAGAGGTGACTGTGTCACAGAGAACATCTATAAAATGTATAGGAGAGTATCTGGCCCTTCTCCCAATCCAgtcccccacccacccacaaacAGTCTGTGACAGCAAGAATGAAACTGAGGAGAAATAATGTTTCTCATGTTGTATGTATGTGGTGAACAATGATACAATTGTCTTCTTTCCTTGCAAGGCCTGGCACTTAAAACACCTGCTCTAAGAGATTTGTGTCTATAAAAAAATCAAGATTTATACAAAATGTCTTTCCAGAAACACACCTATTTACAAAATTctgcataaaaaaaaaacacattatgcTCATAAATGGGTCTCTATTAAATGTAACTTTAAAATGGTACTTTTTCACATATTTACATTATTTTAGGCCACTGTATtaccaaaaataaaaacaaacaataaacaagcAGTAAAGGGACATCACATGTTACTTCTAGGACTACAGGGTATTGTGTTACTGTAAATAATTGAAGATCACACAGTGGTGTACACATTATCCTTAAACATTGTGAAGATGATCATTGTGTAATAAACTATACCTTTACCCAATGACaaacaacacacaacaataaaacaATGCTTGTTCAATAGCTAAAGAATTAGGATTCTGTTTGTCACCAGTTTGTCATTGACTTAATTTGAGCTTTATTCTTAACACTATAATTCAgttcaaaacaaacaaaatatgtttaaaaaattTCAAATCATGGTTAGAGTCATATTTGCATATGTTGTAGACATAATTTATTTATGCAATGTAAGTGATAATGTACAAGACACCGGGAAGGCAAAAGTCAACTTTGAGGCTATTTTTCAGCGAAACAATGTTAATTTATCCAAATAAATCCAGactgaaaaaaatatttatataatgtttCAAAAGAAGAGTCAATCTGCTCTAACCCTCAAAGCAGAGAAATATGTCAGTATACAGTCACATCCATCTAAATAACAGTGAATCTGCTCTCTTATCTGAAACAATGCCAACAAACTGGTGTCCTGCTCTCGCTGATAAACTTCTTAATAACTTAAAATAATCTCAATGTTATCAACATGAAAAGTATGCCAGAGTAATTCTACTGTAAATACATGACAGTATCTATCTTGTTTCAAAATAAACACACAGGACTAGACTATGGGACCCACTTAAGTACATGGAGATAAGATATTGAAACAGAAAACATGTGTGATGATTCATATTGAAAATTGATTTGGTACCAGTGTAATCTTGCCTGGTCTTTGAGGATGCCAGGTGATAGGAATGGTAAATCATTAGTCCTCCTCCTGAAGACACCAGAGATGTTTTAGCGCCATCCCGTTGCGGTTGTAACAAGGGTAAAACTCTTTAGGAATTAAAAAAGCCTTTTTGTGAGTAGGAACAGTTTAAGATAAATATGTACTGTACTGCAATTATGTTTGTACAACAATTTATAATGGAGCAGAATCATGACTTACTTTAAGTGTCCACTCTGTACCTCTCTTGTCTGCGCtgtatttacatttattttaaaggTTTGGTTTTCCCATCATCGCACAGCTGAGGAGAATAGGGATTGGAGCTGGTTGCCAAACTCTTTCCATTGTCCTCAAACAAGCTTTTATGGAGATGCACAGCACGTTGGACATTACCTGCATTCCTTCTCATTCTGAGCACACGACTGATCCAGGCTCCATGCCTAAGTGGCTATGAATGAATTCAGACTCAAACATGAATGTGGCAAACAATAAAACCATCCCTAGTATTCCACTGTCTCCAGGAGCAGAACTATCACTACAAATGTCATACCGTTAGGTGAACGCAAATCATTCCCTCCGAAGTCATCCAATTCTTCTGAGAACACGGCCTTTAGGTGGGAGCAAAAGGCTCTGCTCCTTTGATAACATCTTAATTGCTTCCACACTTTTTTCTACTCAAACAAATTTGATCTTGTTATTCTTTTTCACAAAGGGGAAAACTCGGAGTGAAAACCCTCGAGGCCGCTCAGACACAGAAGTGACCTGTCATTTTGAAACATAACCTTTTAGTTTTCTTTAAATTTATTTCAGTCATGATGACCTCTCACCGCAATTGAGTATGAGCTATTTGTCTTTCATTAATTCACATCCAGGGTGAGACATGTTCATTGCTAGTTTTTTCCCACCACAGTTGCATACCTGACTTTGCCTGTTTGGACACGCTTAAAGAAGTATAACAGGAGACACATACTGAACACAATTATGAGACCTACATATGTAAGTGTTGGTTTCTTTTATAAACAGAAAGTGGACAACCTCAAAATAGCCATTAATGACACAGATCCTCCTACATGTGACAAAGTATCAGTAAAGGATAcatgaaaaatattaatatttaCCATAATATAGTATGTTTTAACTAGATATTCAGTAGAAATATTAATATTTACCATAATATAGAATGTATTAACTAGATATTCAGTAGAAAAGAAACACAATGTTGAAGGAGCAGACACTGGTGAAAAGGAAGCTACTGTAGGTGACTGATAAAAAACAATAGCGCAGGTAAAACACATTTGTTGTGAAAGGGAAGTGTATTTTGCTGTCATCACACTGTGcctttttctgtctctgagcaaACAATGGAGGCTTCATTACAGGAATGGAGCCCATGAGTGACAGCCCTATTGCAGGGTCCTTTGTTTGTGTAGTATACCCTGTTTGCAACTTGTCTCCATTGTCAGAGTGAAGGCATCTCTACGCCATAGGCTTTACCGTCTTACAGTCTTCTCAGACACACAGTATAGCAAAACTTGGGTGAATTAAAATTTCTAGCTTGAAGCAGGAAGAGAAGACGACACAATCTCTCCAAAACCTGCCTTTGGCCTATCCGGAAACATGTTTCATGTTTTATGTTTCAACTACTGTATCCAGGACAACCTTCTTTCATTTCTGTTCTTGTGTCACTATTTTGAACATCAAAAGTGTCTTTCAACATCAGACGGACAAGGTAGTAAAAGGTAGGCCAGAATTCTCCCCTACAGCAAGCATCCTAGACATAGTCGTTGCCTCAGACCTTGTAGTAGATGTTGGCTGGGCTTTGCGCTGGCATCTCTTGGACTATATAAACCGGATGGCCATATTCCCCGCTCACCTTCTCGTAATGGGGACagtagttgttttctgtagtCCGTAGCGGGATGATGATGTCACTGGGTTCGGAGCCGGCGTTCCCAGAGCACTTGGGGCTGGCCAGCGTGCTGAGTGACAGAGCGGTGGTCCGCTGCTGGGTGTGCTTACGGTTCCTCTTCTTCAGCTTGATCAGCAGGacgatgaggatgatgatgatcagGAGGAAGATGACGCATCCCGCCCCGATGACTGCAAACAGCGCTGGCTTGGAGGCAAAGAAACCCTCCGCTGAGTCGGACGAGTCTGACTTGTTGTCCTG

Function

NR:

description
ephrin-B1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1201638 True 4355 lncRNA 0.39 2 26412487 26416866

Neighbor

gene id symbol gene type direction distance location
fam155b LOC106567779 coding downstream 148131 26215919 ~ 26264356 (-)
LOC110537277 LOC106567777 coding downstream 202296 26145977 ~ 26210191 (-)
wnt11f2 LOC106568050 coding downstream 274124 26135796 ~ 26138363 (-)
igbp1 LOC106567775 coding downstream 295908 26113536 ~ 26116579 (-)
LOC110537274 cxb1 coding downstream 299134 26109701 ~ 26113353 (-)
c12hxorf56 cssa13hxorf56 coding upstream 222840 26639706 ~ 26645901 (-)
stard8 LOC106567782 coding upstream 258112 26674978 ~ 26717652 (-)
LOC110537285 LOC106567783 coding upstream 314585 26731451 ~ 26739037 (-)
ar-alpha ar-alpha coding upstream 392487 26809353 ~ 26863253 (-)
LOC110537288 NA coding upstream 469167 26886033 ~ 26888305 (-)
G1054509 NA non-coding downstream 237201 26175049 ~ 26175286 (-)
G1054490 NA non-coding downstream 254966 26129084 ~ 26157521 (-)
G1054474 LOC106567773 non-coding downstream 326292 26085074 ~ 26086195 (-)
G1054466 LOC106567773 non-coding downstream 333978 26077471 ~ 26078509 (-)
G1054685 NA non-coding upstream 41 26416907 ~ 26423895 (-)
G1054885 NA non-coding upstream 324823 26741689 ~ 26741938 (-)
G1054914 NA non-coding upstream 362964 26779830 ~ 26786466 (-)
G1054920 LOC106567784 non-coding upstream 375275 26792141 ~ 26792628 (-)
G1054951 NA non-coding upstream 453798 26870664 ~ 26871675 (-)
G1054232 NA other downstream 753482 25657269 ~ 25659005 (-)
G1054211 NA other downstream 787850 25623879 ~ 25624637 (-)
LOC118936414 NA other downstream 1804667 24600309 ~ 24607820 (-)
G1052040 acaca other downstream 1857487 24554697 ~ 24555000 (-)
G1050429 NA other downstream 3168217 23243637 ~ 23244270 (-)
G1055010 NA other upstream 563917 26980783 ~ 26982355 (-)
G1055199 NA other upstream 728344 27145210 ~ 27145493 (-)
G1056225 NA other upstream 1561160 27978026 ~ 27978436 (-)
G1057449 LOC106567827 other upstream 1759520 28176386 ~ 28177073 (-)
G1057600 NA other upstream 2024403 28441269 ~ 28441695 (-)

Expression


Co-expression Network