G1054685


Basic Information

Item Value
gene id G1054685
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 26416907 ~ 26423895 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1201639
CTACGTATGCCGGCCAAAGTTCAAAAAGTTTGGAGTAATGGAGAGGACAGTGTTTCACTATCACAGGCCAAGACCTTTgtaacagtttgcagttctccaaGGGGAAGGTGGATGTCATGAAAGAGACTAGCAGCAAGATGGCAACAAACTcttccgggtatgctggaaTCGGGCTGGCTTTGTATTGCCTGTCCCTAATTGCATGTTcattgtcctccctccctcccaaaagcCAGAGAGGACTGAGAGAGCCAAGCTTCCGGcatcttcacaaggttgctgttgttctgggattgaatgaaccagacttgtggaggtccaccatTTTTcttcggaggtcttggctgatttcttttgattttcccatgatgtcaagaaaagaggcaccgagtttgaaggaagaatAGATGCGGCCTCTACAAAAGCTAATGGGAatccaaataaacaaacaaactctCTCTGGACTTAGTGGCAGATGAGCATATCTTCCCCCAGGCTGTTGCCTATATTGCATTGCTCTCAGATAGAGGTTGGGAATCTCATTCCATGCATGTCGTCCAAGTGCCACTCCATGGTTGCAAGATGTCTGGAGTATCTCTCAGAGAACATCCTGAGTTATTGAATCCCTGGCACAGGGCAAATGACATGCCATATGTGCTTCATATTGGACCCAGTCAAGTATTTACTAAATGTTTTGCATGTtaaagaggagagaaacagaggatcTGTGAATCCAGCAGCACTCTCTAAGCCATCGATTTAAAACATAGGCTTCAGATGGAATGCCTGTCTTACAGAGACAGATCAAAGTTTTGGATGTAAAATAATGATAACCAACATTTATTTTGTTCAGCTAAGAAATGTGGCTGTTGAAATATACACTgtatgtacaaaatattaggaacaccttcctaatattgagttgcaccccctttttccctcagaacagcctcaattcatcagggcatggactacaaagtgtcgaaagcgttccacagggatgctggcccatgttgactccaatgcttcccacagttgtgtcaagttggttggatgtccggTGGgagatggaccattcttgatacacacaggaaactgttgagcgtgaaacactcagtagcattgcagttcttgacacattcaaaccagtgcacctggcacctactaccatacctcgttcaaaagcacttaaatcttttgtctttcctactcaccctctgaatggcacacatacacaatccatgtctcaattgtctcaaggctttaaaaaatcattctttaacatatctcctcctcttcatctacgctgattgaagtgtatttaacaggtgacatcaataagggatcatagctctcACCTCGTCAGTCTGTcaggtgctcctaatgttttgtacacacagtgGTGCCTTGCATAAGACACACATTCTACTGTGCAGGGTCAATGCACCATATGCTATCGATTTTTCTAATAAAAGACG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1201639 True 1478 lncRNA 0.44 5 26416907 26423895

Neighbor

gene id symbol gene type direction distance location
fam155b LOC106567779 coding downstream 152551 26215919 ~ 26264356 (-)
LOC110537277 LOC106567777 coding downstream 206716 26145977 ~ 26210191 (-)
wnt11f2 LOC106568050 coding downstream 278544 26135796 ~ 26138363 (-)
igbp1 LOC106567775 coding downstream 300328 26113536 ~ 26116579 (-)
LOC110537274 cxb1 coding downstream 303554 26109701 ~ 26113353 (-)
c12hxorf56 cssa13hxorf56 coding upstream 215811 26639706 ~ 26645901 (-)
stard8 LOC106567782 coding upstream 251083 26674978 ~ 26717652 (-)
LOC110537285 LOC106567783 coding upstream 307556 26731451 ~ 26739037 (-)
ar-alpha ar-alpha coding upstream 385458 26809353 ~ 26863253 (-)
LOC110537288 NA coding upstream 462138 26886033 ~ 26888305 (-)
G1054684 NA non-coding downstream 41 26412487 ~ 26416866 (-)
G1054509 NA non-coding downstream 241621 26175049 ~ 26175286 (-)
G1054490 NA non-coding downstream 259386 26129084 ~ 26157521 (-)
G1054474 LOC106567773 non-coding downstream 330712 26085074 ~ 26086195 (-)
G1054885 NA non-coding upstream 317794 26741689 ~ 26741938 (-)
G1054914 NA non-coding upstream 355935 26779830 ~ 26786466 (-)
G1054920 LOC106567784 non-coding upstream 368246 26792141 ~ 26792628 (-)
G1054951 NA non-coding upstream 446769 26870664 ~ 26871675 (-)
G1054957 LOC106567786 non-coding upstream 457827 26881722 ~ 26883442 (-)
G1054232 NA other downstream 757902 25657269 ~ 25659005 (-)
G1054211 NA other downstream 792270 25623879 ~ 25624637 (-)
LOC118936414 NA other downstream 1809087 24600309 ~ 24607820 (-)
G1052040 acaca other downstream 1861907 24554697 ~ 24555000 (-)
G1050429 NA other downstream 3172637 23243637 ~ 23244270 (-)
G1055010 NA other upstream 556888 26980783 ~ 26982355 (-)
G1055199 NA other upstream 721315 27145210 ~ 27145493 (-)
G1056225 NA other upstream 1554131 27978026 ~ 27978436 (-)
G1057449 LOC106567827 other upstream 1752491 28176386 ~ 28177073 (-)
G1057600 NA other upstream 2017374 28441269 ~ 28441695 (-)

Expression


Co-expression Network