G1057449 (LOC106567827)


Basic Information

Item Value
gene id G1057449
gene name LOC106567827
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 28176386 ~ 28177073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1204716
TTGAGCCCTgtgctgtgtttgtctgtgtacgGTCAGGGGAAGGCGAGGAGACGGTGAAGGCACCAGACCCAAGTCGCTGCTCAGCCATGCTGATCGCTTCCTCCATATCCCTGGGTTGCTGCTTCTGCACCCAGGCACCAGCCTCCTTTGGTAAGAGGGACAGAAACTGCTCCATGGCAACACACTGCTCTACCTGTGCAGCAGTTCTTAGGTCAGGCCTAAGCCAGTGCTTAGCAGCTGAGTCAAGCCTCTGCCCCAGCTCTCTGGCTCCCTTCTGTGGTTCGTACCGCAGAGACAAGAAGTCCTGCCTGCTCTGGTCCTCCACAGTCCACATCTGTCCCAGTACCCTGGTCTGGAATGCATTAGACAACCCCTGGGGTCTGATCAGTTGATTCTTCTTCTGTGTCTCCTCTTGCAGCAGACCATCAAGCCTAGCACCCCAGTCCTCTGGGTCTTTATCTCTCCCTGGTGTCAACCGATGCCTTCTCTGTTCCTCTACATCCTGGGGTGAAGGCCGGTCAAGGGTTCTGGTCAAACCATCCTTGACAAGCTGGCTGAGGACCTTGGCCTGGATCTCCCCCTGTCTGGTCAGCGCTTTCAGCTGTTGTTTATGCACATCCAGCAGGGACACCAGGAACTCAACCACATCCATAATGATTGCAGGTGCCAATGGCGAGGgcagtaaaaa

Function

NR:

description
zinc finger and SCAN domain-containing protein 21-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1204716 True 688 TUCP 0.55 1 28176386 28177073

Neighbor

gene id symbol gene type direction distance location
LOC110537333 LOC106567826 coding downstream 384 28170969 ~ 28176002 (-)
LOC110536834 mrpl48 coding downstream 114567 28056959 ~ 28061819 (-)
dnajb13 dnajb13 coding downstream 119895 28042588 ~ 28056491 (-)
LOC110537327 ppme1 coding downstream 145464 28013959 ~ 28030922 (-)
LOC110537326 LOC106603344 coding downstream 222499 27871559 ~ 27953887 (-)
LOC110537335 LOC106567828 coding upstream 4894 28181967 ~ 28184870 (-)
LOC110537339 NA coding upstream 37741 28214814 ~ 28221569 (-)
LOC110537342 LOC106567833 coding upstream 67218 28244291 ~ 28271665 (-)
LOC118937653 NA coding upstream 144567 28321640 ~ 28322881 (-)
LOC110537346 LOC106567838 coding upstream 275819 28452892 ~ 28468708 (-)
G1057472 NA non-coding downstream 11544 28164334 ~ 28164842 (-)
G1057380 NA non-coding downstream 143713 28032462 ~ 28032673 (-)
G1056245 NA non-coding downstream 184374 27991693 ~ 27992012 (-)
G1056236 NA non-coding downstream 190483 27985701 ~ 27985903 (-)
G1056231 NA non-coding downstream 195392 27980686 ~ 27980994 (-)
G1057446 LOC106567827 non-coding upstream 231 28177304 ~ 28178724 (-)
G1057448 NA non-coding upstream 1750 28178823 ~ 28180060 (-)
G1057437 NA non-coding upstream 11884 28188957 ~ 28191673 (-)
G1057476 NA non-coding upstream 14735 28191808 ~ 28192379 (-)
G1057479 NA non-coding upstream 17189 28194262 ~ 28195682 (-)
G1056225 NA other downstream 197950 27978026 ~ 27978436 (-)
G1055199 NA other downstream 1030893 27145210 ~ 27145493 (-)
G1055010 NA other downstream 1194031 26980783 ~ 26982355 (-)
G1054232 NA other downstream 2517381 25657269 ~ 25659005 (-)
G1054211 NA other downstream 2551749 25623879 ~ 25624637 (-)
G1057600 NA other upstream 264196 28441269 ~ 28441695 (-)
G1057796 LOC106567846 other upstream 705455 28882528 ~ 28886411 (-)
LOC110537362 LOC106567848 other upstream 718509 28895582 ~ 29021369 (-)
G1057998 NA other upstream 1090371 29267444 ~ 29267991 (-)
LOC110537376 NA other upstream 1216522 29393595 ~ 29436595 (-)

Expression

G1057449(LOC106567827) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
End of interactive chart.

G1057449(LOC106567827) Expression in each Bioproject

Bar chart with 10 bars.
G1057449(LOC106567827) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 7.
End of interactive chart.

Co-expression Network