G1059288


Basic Information

Item Value
gene id G1059288
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30691067 ~ 30700398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1206823
gagtttttaccaaaaagttatattttgttttcatctgaccatatgacattctcccaatcttcttctggatcatccaaatgctctttagcaaacttcagacgggcctggacatgtactggcttaagcagggggacacgtctggcactgcaggatttgagtccctggcggcgtagtgtgttactgatggtaggctttgttactttggtcccagctctctgcaggtcattcactaggtccccccatgtggttctgggatttttgctcaccgttcttgtgataattttgaccccacgggggtcaaaattgcgtggagccccagattgagggagattatcagtggtcttgtatgtcttccatttcctaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattgtgtttctgttgtcctttgacagctcttttgtcttggccatagtggagtttggagtgtgactatttcaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtagatgaccaaatacttattttccaccataatttgcaaataaattcgtaaaagaatcctacaatgtgattttctggattttttttctggattttgtctgtcaaagttgaagtgttcctatgatgaaaattacagacctctcatatttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtatgttgaaaAATGTGTAGGGGAAATCAATTTCTGTGTAATAATAACAGTATTTGAAACAACAATAGAGAAAAAAAATTATAGTTAGCCTAAATATATTTCACCCCCATAGATTACACACTTTTTCACACAGCTACATCACCTTAAGTTAGCActttccttcaaactgcacataGATACATTAAaatgttcatctgactctggggatcCTGAACTATCCCTTTTAGGTTGATGCATTTAAATATTTTCATAGACAACTAGCTAAGATCTCTAAACTTTAAAAGTCCATTTAGTAAAGCCAGTATGTCATCAAAAATAGATGTCGTGTTTGTCGTAAAGTATCTATTTTCCTGACTGAACATTATTTTATAAATGAAGAATTAGTGAAAGGGAAATACTACTGTGATCGTCAAACATTACCGTTTTGTGCAAATTTCTATACATATATCTTTTTAATACTGGCTCATCAATGAAGCATTCGGGAACTTCAAGACATTTGGCATCCACTGAAGGCAATCAATGCAATGGACAGCAGATTCACTGTGTATCAACAACATGCTTCAAATAATATTAGTTATTATACCGACTAAATAAGTGGTAAGAGAACAGATTATTTGAAATTTAGGACTTAGGCCTACATGATATACTATACTTTTTGAAGTCATTACTGTGAGTGGATGCCGTAGGTGTAGATGCCATAGGTGCTTAGAACTGTACGGCTGGTGAGGAGTTTGATTCTGACGGTGCATTAAATGGCAAACTAAAGTGTAGCAAAGTATCCTTTTAGAAAACATGGTTGCTAACATCTAAAACGTCTCGAGGTGAGATCACTTTGACACAGTGTTGTGTTTCCAAGGATAGGAGGCTAGTACTTTAGGGGCTATGTAATGTGCAGCCAGTCCAACAACCCTTGCTGTAGAATATTCACCCAGTCACACAGCAGGAACCTGTGCATAGCTCAGGAGATGCAGAGATCAATCAATCCATTTTCTGGGGGATGTGGCCCATTTTGGTGCGAATGTTACGGAACAGAAAGAAGATGACTGTCGTCACGGCAATGGTCACTTCAGCTACCCAGAAGGCCATGTCCCAGCTGTAGTACTTAGCGATGGTGCTGAAGGGGAGTCCCGCAAAGAAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1206823 True 1994 lncRNA 0.40 2 30691067 30700398

Neighbor

gene id symbol gene type direction distance location
LOC110537426 NA coding downstream 18942 30648676 ~ 30672125 (-)
LOC110537425 LOC106567906 coding downstream 53029 30633836 ~ 30638038 (-)
LOC110537422 LOC106567903 coding downstream 127312 30537787 ~ 30563755 (-)
LOC110537420 LOC106567901 coding downstream 170233 30494121 ~ 30520834 (-)
LOC110536844 LOC106603575 coding downstream 211396 30476900 ~ 30479671 (-)
mipepb LOC106567911 coding upstream 39367 30739765 ~ 30755440 (-)
LOC110537432 NA coding upstream 69766 30738076 ~ 30773877 (-)
LOC110537435 dscam coding upstream 194664 30895062 ~ 31031788 (-)
LOC110537436 tmprss2 coding upstream 374463 31074861 ~ 31100847 (-)
mmp30 LOC106567923 coding upstream 413259 31113657 ~ 31122131 (-)
G1059318 NA non-coding downstream 18326 30672491 ~ 30672741 (-)
G1059283 NA non-coding downstream 100681 30590147 ~ 30590386 (-)
G1059282 NA non-coding downstream 101311 30588737 ~ 30589756 (-)
G1059281 NA non-coding downstream 103093 30587743 ~ 30587974 (-)
G1059280 NA non-coding downstream 104877 30585894 ~ 30586190 (-)
G1059331 NA non-coding upstream 7172 30707570 ~ 30707783 (-)
G1059352 NA non-coding upstream 43431 30743829 ~ 30744806 (-)
G1059388 igsf5 non-coding upstream 116573 30816971 ~ 30861437 (-)
G1059505 NA non-coding upstream 299759 31000157 ~ 31006587 (-)
G1059546 NA non-coding upstream 366070 31066468 ~ 31066694 (-)
LOC110537417 rnasek other downstream 238854 30447386 ~ 30452456 (-)
G1059183 NA other downstream 355811 30334827 ~ 30335256 (-)
LOC110537405 NA other downstream 737413 29951555 ~ 29960420 (-)
G1058320 NA other downstream 887451 29800853 ~ 29803616 (-)
G1059610 NA other upstream 367187 31067585 ~ 31070860 (-)
G1061331 NA other upstream 1290812 31991210 ~ 31992555 (-)
G1062051 NA other upstream 2339087 33039485 ~ 33086066 (-)
G1062603 NA other upstream 2812527 33512925 ~ 33513375 (-)

Expression


Co-expression Network