G1058905


Basic Information

Item Value
gene id G1058905
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30737656 ~ 30771920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1206407
GGTGATGCCCCAGGGTATGTTCGGTTTGGTTGTCAAACCAAAGGGTTTTGGCACAGAACAGTGTTATGATTAGATCAGCATGTAAATTTGTTTCAGTGGATTGTCCTCTATCTGAACTGATAAGCAGGAAAGATTTGGGGAGACAAAGACAACCAGACTCAATGTGCTGTCTTTGGATTTGAGAAGCCACTACCAAAGAGGACATATGAGATAGCATTCACTGCCTTACTGAAAACCTAATATACACATGCCAACACACACTGCACCCACACTCAATTACAAATCTGAATTATCCCATACTTAAATACTTTGAGAAAGTGGGTGTCAtaacaactagaggtcgaccgattatgatttttcaacgccgataccgattggaggaccaaaaaaaagcagataccgattaaattggacaattttttttttttttTTACAACCACATTTTTATTGGTTTGTTTATACCAATCATGACACAGATACATCTATAAACAAAGAATACAAGAACTGTACACTTGTACTTGATACCTAAAACCCACATGAATATTGCTGGTTTGTGTATTTGACAGCTCAAGTGGATGTACAGTTTCTCAGCATCAAAAGGAACCATAGTCAACAGTATGTTTCACACTTATGTCATTAGCTTGGCTAAGAACAAAGAATTCCATTTACAATGTACCATTAAACACTGCATATAGAAAGTTTGAAAACCCTTTTAAACAGCAGCTGTACACATTTATTGCAATGCTATCACAGAACAGAGACAAAACCAATTACACGCAATGCACAGGCCTGATAGGGAGGAACTCCAGTGCTAGGGAATAGGTTTATTAAGCAGAATGGTTAAGAAAAAAAATGGCATGAGTACAATAGTTAACATACGGAACACAGCTTACAACATTCTAAAACATTTCTCATTATAAACAATAAAACTGTGTTGCCCCTTGAGGAATTCATCCCCACCACACAATACAGGTTACAAATACCGTCCCTCATATAGCCTATGGAATGTTAGTCTCTCAGGCAAGCTCTCTGTTTTGACCGGATCCTGTAAACAACATGCTTGCATGTTCTTGATGCAGCAACCTGGCCCATTCCCACCCCTTCCCCACagcaaaaataaaaacatttgacatttacaATAACCGTAATTGTTCTGGAGATGTAAAAATGTGGGATGTGATGAAATCCGTCTCCAAATGTATTTGTTCCATAAAAAAATGTGTTTCTACAATCAAACTACTAAAAAACTTGCATTTAGAAAATAGTCAATAAAAATATTCCCCTGAATTGTACAAGAAAGAGGAATAGGGAGCAGTGATAAAAGATGTGGTTTGAGAGATGTTATTCTGCCGCATCTTCTTTCTGTTCAGGTTCTTCTGTGGCTGGTTCCTGAAAAatCTCTTCCTCAGCTTTGGCTTCGCCATTCTCTGCAGGCGCCTCCTTCTCCTCAGGTGCAGCCTTCTTCACCTCCTTAGCCTTCTTGGGCTTGGGTACTGCCTTCtccttctgtgtgtgtatgtatgtatgtgtatatatgtacacGCACACAATACCTTAAGTCCTTAACTGCACTTAATTTACTATTAAATGTACATTCAACGTGGTTAATGTCAGCACTTCCTCACCTTTGGCTTGGGCTCTGCCTTTGGAGGGGCTGGTTTCTGCAATTAAAGGCATTTTAGCATGTGATTCTTAGCTGCAATTGTCTGTTTTTGGGTGCAAATGAAATGTGTCTACAAAGGTGTGTAATATACTTACATTTACCAATCTCTCAGATCTCCTCTTGGGctgcaaaatatttcaaaagaaAATACCAATTGTTTAATAAAAACGGGAACAGATTGACAACATGGTTGATGCTGGCCCC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1206407 True 1867 lncRNA 0.39 3 30737656 30771920

Neighbor

gene id symbol gene type direction distance location
LOC110537430 LOC106567913 coding upstream 7869 30718100 ~ 30729787 (+)
LOC110537427 LOC106567909 coding upstream 45338 30676618 ~ 30692318 (+)
LOC110537424 LOC106567905 coding upstream 126247 30609035 ~ 30611409 (+)
LOC110536846 LOC106567904 coding upstream 134362 30602356 ~ 30603294 (+)
LOC110536845 LOC106568061 coding upstream 154979 30581313 ~ 30582677 (+)
LOC110537431 wrb coding downstream 2120 30774040 ~ 30788637 (+)
igsf5a igsf5 coding downstream 26979 30798899 ~ 30824358 (+)
LOC110537434 NA coding downstream 76588 30848508 ~ 30879117 (+)
LOC110537442 LOC106567929 coding downstream 474367 31246287 ~ 31303725 (+)
LOC110537444 NA coding downstream 605947 31377867 ~ 31379355 (+)
G1058900 NA non-coding upstream 25504 30711833 ~ 30712152 (+)
G1058883 NA non-coding upstream 63314 30674054 ~ 30674342 (+)
G1058869 NA non-coding upstream 76962 30658879 ~ 30660694 (+)
G1058855 NA non-coding upstream 94511 30633186 ~ 30643145 (+)
G1058822 NA non-coding upstream 145852 30590922 ~ 30591804 (+)
G1059541 NA non-coding downstream 292262 31064182 ~ 31064633 (+)
G1059543 NA non-coding downstream 292786 31064706 ~ 31065014 (+)
G1059549 NA non-coding downstream 299217 31071137 ~ 31071507 (+)
G1059552 NA non-coding downstream 302529 31074449 ~ 31074779 (+)
G1059555 NA non-coding downstream 303758 31075678 ~ 31107101 (+)
G1058787 LOC106567901 other upstream 220766 30516081 ~ 30516890 (+)
G1058669 NA other upstream 480107 30257057 ~ 30257549 (+)
LOC110537400 LOC106603592 other upstream 666250 30067984 ~ 30071409 (+)
G1057271 NA other upstream 839181 29898196 ~ 29898475 (+)
LOC110537386 LOC106567871 other upstream 1015871 29698677 ~ 29726867 (+)
G1059091 NA other downstream 228307 31000227 ~ 31007066 (+)
G1059685 LOC106567926 other downstream 435709 31207629 ~ 31209357 (+)
G1060470 NA other downstream 1039142 31811062 ~ 31811347 (+)
G1062404 NA other downstream 2587814 33359734 ~ 33366249 (+)

Expression


Co-expression Network