G1059352


Basic Information

Item Value
gene id G1059352
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30743829 ~ 30744806 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1206900
ggttttctaatgcctcgcGAAGGACAGCTATTGGTTgatggtaaaaataaaaaaaagcagacattgaatatccctttgagcatggtgaagttattaattacacttttgatggtgtatcaaaacacccagtcactacaaagatacaggtgtacTTCCTAACTCAATTACCAAAGAGGAAGGAAACtgatcagggatttcaccatgatgaCAATGTTGACTtttaacagttacagagtttaatggctgtgacaggagaactgaggatggatgaactttatagttactccacaatactaacctaattgacagagtgaaaagaaggaagcttgaagagaatacaaatattccaaaacatgcatcctttttGCAACAAGGCAATAAAGTAATTCTGCAAGAAAATGTGATAAAGCAACtacatttttgtcctgaataaaaagtgttatgtttggggaaaatccaatacaaggcattactgagtaccacttacCATTTTTTTTAGCATAGTGgtgcctgcatcatgttatgggtatgcttgtaatcgttaaggactggggagttgttcaggataaaaaagaaacggaatagagctaagcacaggcaaaatcctagaggattcagtcagataaattcacctttcagcaagacaataacctaaaacacaaggcctaaTCTACACGAGTtgattaccaagaagacagtgaatgttcctgagtagctgagttagttttgacttaaatctacttggaaaaactatggcaagacctgaaactGTTTGTCTTgctatgatcaacaaccaattagaCAGCTTAAAGAATGTTTGGTAAgttttgcacaatccaggtgtggatagctcttagagacttagccagaaagactcacagccacaatcactgccaaaggtgcttctataaagtattgactcaggtgtgaatataaattaaatatttctgtattgAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1206900 True 957 lncRNA 0.37 2 30743829 30744806

Neighbor

gene id symbol gene type direction distance location
LOC110537426 NA coding downstream 71704 30648676 ~ 30672125 (-)
LOC110537425 LOC106567906 coding downstream 105791 30633836 ~ 30638038 (-)
LOC110537422 LOC106567903 coding downstream 180074 30537787 ~ 30563755 (-)
LOC110537420 LOC106567901 coding downstream 222995 30494121 ~ 30520834 (-)
LOC110536844 LOC106603575 coding downstream 264158 30476900 ~ 30479671 (-)
LOC110537432 NA coding upstream 25358 30738076 ~ 30773877 (-)
LOC110537435 dscam coding upstream 150256 30895062 ~ 31031788 (-)
LOC110537436 tmprss2 coding upstream 330055 31074861 ~ 31100847 (-)
mmp30 LOC106567923 coding upstream 368851 31113657 ~ 31122131 (-)
mmp mmp coding upstream 398269 31143075 ~ 31150780 (-)
G1059331 NA non-coding downstream 36046 30707570 ~ 30707783 (-)
G1059290 NA non-coding downstream 43323 30692953 ~ 30700506 (-)
G1059288 NA non-coding downstream 43431 30691067 ~ 30700398 (-)
G1059287 NA non-coding downstream 48495 30693176 ~ 30695334 (-)
G1059318 NA non-coding downstream 71088 30672491 ~ 30672741 (-)
G1059388 igsf5 non-coding upstream 72165 30816971 ~ 30861437 (-)
G1059505 NA non-coding upstream 255351 31000157 ~ 31006587 (-)
G1059546 NA non-coding upstream 321662 31066468 ~ 31066694 (-)
G1059613 NA non-coding upstream 328686 31073492 ~ 31073754 (-)
G1060051 NA non-coding upstream 471309 31216115 ~ 31216331 (-)
LOC110537417 rnasek other downstream 291616 30447386 ~ 30452456 (-)
G1059183 NA other downstream 408573 30334827 ~ 30335256 (-)
LOC110537405 NA other downstream 790175 29951555 ~ 29960420 (-)
G1058320 NA other downstream 940213 29800853 ~ 29803616 (-)
G1059610 NA other upstream 322779 31067585 ~ 31070860 (-)
G1061331 NA other upstream 1246404 31991210 ~ 31992555 (-)
G1062051 NA other upstream 2294679 33039485 ~ 33086066 (-)
G1062603 NA other upstream 2768119 33512925 ~ 33513375 (-)
med13a med13 other upstream 2772959 33419083 ~ 33532690 (-)

Expression


Co-expression Network