G1059388 (igsf5)


Basic Information

Item Value
gene id G1059388
gene name igsf5
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30816971 ~ 30861437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1206940
ACATCAAACACTTCACTGCAACAATCACACTATAAACCTCACATAATGATCAAGGTAACTGATCTGGTAATTGGGGACAAAATGGTAGCAGAACTCTCTTACCCCATTTCCTTCTGGTAGCTGGATTCTGAAATGAACCCCCGAGGGAAAATAATAATGAATCAGGTATAGACGTGTTGCTTTTGGTGATGGTAATTATGCCATGATGAATGTAGTAGGTCaaactttatttggatagtccatctgtagatgctatctacagactatcagtaacatttcaactaactatctactaaccctaacactagctctaaccctaaccttaaccttaccctaacccttattctaaacctaaccctaaccttagcaagcacttgcttatcaacagatagtttgttgatagtatgaccatcagtagagcatctacagatggaaaaTCCGGACTTTCTAAATCAAGTGTGACCGAATTAATTCTCCAACATTTATCTCtagacatataggcctataggtgttatagacctatagtcaGAGTTTTGATATTAGACCTCATGTGTACCCTTTCAGACAGTGAGTAATCTATATCCACAAATTATCATACATTAACCTTTATACTCATTAGAAGGTTTACTGCAAGTCAACCTCTTTGTTAGCATCTCCTTGAAGTCTGTTGCTTGTTGAGCTTTCCTGTATGCATCGGACATATGAGAGGCAAGCAGCGGGAGCCAAACAGTCCTAACGTTACTATATTTTCTGACTGGTGTGTCCTGTATTTAGATGAAGGCCTCTGCATATATCTCACCCTGGCATTGTCCTAATAGAGGACCTCAGTCTACTTGTTTTCTACTTTCTTCAGTGAAACAGAGCAAGAGGCTCGATTTGGGCATGACTCCTGCTCCTTGGACTACAGGAGGTTTGACCTTGATACAAGCTAAAGAAAGGCTTCTTACTTGCTTCTTTTCTGCGTTTGCAGCAGAAGACGATTCCAAGGATGAGCAGCACCAGCAGAGCGAAGCCACCGATGGAACAAACGACAGCGATGAGCACAGTCCAGTCTTGGGGCTCTGGTGAAACAGTGGTCTCAACCACCAGGTAGATGGAGCTGGACAGTGGGGTGGTCAGGGCAGATACGCTGGCCAGGCACTTCACTTGGACACTGTTGACCCCACGGACAGTGAGGAGGCTGATGGAGTTATACAGACTGTCCAGGGCCTCACTGCTACTGTTGTAGCTGTTCTGGTCCACCACGACCCCATCCACCACCCAGCTCACTGTGGGCTTAGGGAACCAACCAGAGGCCTCACACTGGACGATGGCCTGGTTGCCCTGGGCCACTGTCATGTTACCTCCCACAATCCTCACTGTGCCGCTCTCtgtggagacagacagaagagaacaGTCATCAACCGTGAGGGATGACATCTTACATGAAACACAATGAATATACTGTAGTGTTAATGTTGGACCACCTACAGAAGTGGATAATTCTACAGATGTTGgaacttaatttgagccagtttgcttcagcaggaaaataatcctgcaactATGTTCTAGTATGGTAAATGCTTCCTGAATGTCCTGACTTA
>TU1206941
gccctcaaccgtaaggctctccagagggtagtgaggtctgcacaacgcatcaccgggggcaaactacctgccctccaggacacctacaccacccgatgtcacaggaaggccataaagatcatcaaggacatcaaccacccgagccactggctgttcaccccgctatcatccagaaggcgaggtcaatacaggtgcatcaaagctgggaccgagagactgaaaaactacttatatctcaaggccatcagactgttaaacagccatcaccaacacagagaggctgctgcctacatacagactcaaatccatggccactttaataaatggattactattcactttaaataatgccacattaataatgtttacattactcatctcatatgtatatacagttgaagtcagaagttttcaaacatttaggttggagtcattaaaaatcgtttttcagccactccacaaatatcttgttaacaaactatagttttggcatgtcggttaggacatctactttgtgtatgacacaagtcatttttccaacaattgtttacagacagattattaagATTCACTtctaattcaatgtatcacaattccagtgggtcagaagtttacatacactaagttgactgtgccttaacagcttggaaaattcctgaaaatgatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattggaaatgtacctgtggatgtatttcaaagcctaccttcaaactcagtgcctctttgcttaacatcatgggaaaatcaaaagaaatcaaccaagacctcagaaaacaaattgtagaccaccacacatctggttcctccttgggagcaatttccaaacacctgaaggtaccacgttcatctgttcaaacaatagtacgcaagcataaacaccatgggaccacgcagccatcataccgctcaggaaggagatgcgttctgtctcctagagatgaacgtactttggtgcgaaatgtgcaaatcaatcccagaacaacagcaaaggaccctgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagaaaaatGAGTTCTATATTGACATAATGGCCGCtcaagcaaggaagaagccactgctccaaaaccgccataaaaaagccagactacggttttcaactgcacatggggacaaatatcgtactttttggagaaatgtcctttggtctgatgaaacaaaactattttttttatggccaaaaagttctaactatagaactatttggccataacgaccattgttatgttcggaggaaaaagggggaggcttgcaagccgaagaacaccatcccaaccgtaaagtacgggggtggcagcatcatgttgtggggttgctttgctgcaggagggactggtgcacttagaTGATGGAACcatgaggaagtaaaattatgtggacatattgaagcaacatctcaagacatccgtcaggaagttaaagcttggttgcaaatgggtcttccaaatggacaatgaccaaaagcatacttccaaagttgtggcaaaatggcttaaggaaaacaaagtcaaggtattggagtggccatcacaaagcccaaagacctcaatcctataggaaatgtgttggcataactgaaaaagcgtgtgcgagcaaggaggcttaccaacctgactcagttacaccagctttgtcaggaggaatgggacaaaattaacccaacttattgtgggaagcttgtggaaggctaccccgaaacgtttgacccaagttaaacaatttaaaggcaatgctcccaaatactaattgagtgtatgcaaactcctgacccattgggaatgtgatgaaataaataaaagctgaaataaatcactctctctgctattattcttattctttactaggtttaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgaaaacttccgacttcaactgtactataTTTTATACCAcgtattgcatcttgcctatgctgctcggtcatcactcatccatatatttatatgtacatatttttattccacccctttagatttgtatgtattaggtagttgttgtggaattgtttgaTTAtttgttggatattactgcactgtcggaactagaagcacaagcatttctctacacttgcattaacgtctgctaaccatgtgtatgtgaccaataaaatttgatttgatacatttctacagttatattacatGTATCTCCTATAAAAACGCATTTAAAAATGTGTGCATGCCCTTGTCCCGTGAACAAAACGTGCCCCCCTATGGAAATCAAATGCCTGTCTAACTGAAGAGTCAGAAGAGTTCTTACCAACCACCAGGTAGATGGAGCTGGACAGTGGGGTGGTCAGGGCAGATACGCTGGCCAGGCACTTCACTTGGACACTGTTGACCCCACGGACAGTGAGGAGGCTGATGGAGTTATACAGACTGTCCAGGGCCTCACTGCTACTGTTGTAGCTGTTCTGGTCCACCACGACCCCATCCACCACCCAGCTCACTGTGGGCTTAGGGAACCAACCAGAGGCCTCACACTGGACGATGGCCTGGTTGCCCTGGGCCACTGTCATGTTACCTCCCACAATCCTCACTGTGCCGCTCTCtgtggagacagacagaagagaacaGTCATCAACCGTGAGGGATGACATCTTACATGAAACACAATGAATATACTGTAGTGTTAATGTTGGACCACCTACAGAAGTGGATAATTCTACAGATGTTGgaacttaatttgagccagtttgcttcagcaggaaaataatcctgcaactATGTTCTAGTATGGTAAATGCTTCCTGAATGTCCTGACTTA

Function

symbol description
igsf5 Predicted to enable PDZ domain binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in apical plasma membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and cell surface.

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1206940 False 1586 lncRNA 0.44 2 30816971 30821894
TU1206941 True 2897 lncRNA 0.42 2 30816971 30861437

Neighbor

gene id symbol gene type direction distance location
LOC110537432 NA coding downstream 43094 30738076 ~ 30773877 (-)
mipepb LOC106567911 coding downstream 61531 30739765 ~ 30755440 (-)
LOC110537426 NA coding downstream 144846 30648676 ~ 30672125 (-)
LOC110537425 LOC106567906 coding downstream 178933 30633836 ~ 30638038 (-)
LOC110537422 LOC106567903 coding downstream 253216 30537787 ~ 30563755 (-)
LOC110537435 dscam coding upstream 33625 30895062 ~ 31031788 (-)
LOC110537436 tmprss2 coding upstream 213424 31074861 ~ 31100847 (-)
mmp30 LOC106567923 coding upstream 252220 31113657 ~ 31122131 (-)
mmp mmp coding upstream 281638 31143075 ~ 31150780 (-)
LOC118937817 NA coding upstream 299175 31160612 ~ 31176005 (-)
G1059352 NA non-coding downstream 72165 30743829 ~ 30744806 (-)
G1059331 NA non-coding downstream 109188 30707570 ~ 30707783 (-)
G1059290 NA non-coding downstream 116465 30692953 ~ 30700506 (-)
G1059288 NA non-coding downstream 116573 30691067 ~ 30700398 (-)
G1059287 NA non-coding downstream 121637 30693176 ~ 30695334 (-)
G1059505 NA non-coding upstream 138720 31000157 ~ 31006587 (-)
G1059546 NA non-coding upstream 205031 31066468 ~ 31066694 (-)
G1059613 NA non-coding upstream 212055 31073492 ~ 31073754 (-)
G1060051 NA non-coding upstream 354678 31216115 ~ 31216331 (-)
G1060052 NA non-coding upstream 355073 31216510 ~ 31216837 (-)
LOC110537417 rnasek other downstream 364758 30447386 ~ 30452456 (-)
G1059183 NA other downstream 481715 30334827 ~ 30335256 (-)
LOC110537405 NA other downstream 863317 29951555 ~ 29960420 (-)
G1059610 NA other upstream 206148 31067585 ~ 31070860 (-)
G1061331 NA other upstream 1129773 31991210 ~ 31992555 (-)
G1062051 NA other upstream 2178048 33039485 ~ 33086066 (-)
G1062603 NA other upstream 2651488 33512925 ~ 33513375 (-)
med13a med13 other upstream 2656328 33419083 ~ 33532690 (-)

Expression


Co-expression Network