G1061270 (LOC106567935)


Basic Information

Item Value
gene id G1061270
gene name LOC106567935
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 31879227 ~ 31880150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1208973
GGGGTCGTCCCCTCCAATCTGTCCCATGATGCCTTCCATCCACATGAGATGCTCACGCACCACTGAGAAGAACTGGACCTTGTCTGTCACCGAGGTGACCTGCACGCGACTGGCCTCACAGGAAACCAGCAACTCCTTCCATgctgacatcacttcctgttccTTGCTCATGATGGCCTCTGCCTTTTCCCCGGCGTAGATGGCCCTCAGCTGGGCCGCGTTCTCCTGCAGCTGCCTTACCTGGAGTACCACACAGGACATGCCTCTGTCATCTCAAATCATTTGGTCGTCAGTTTAGTTTACAGCCAAGttaatcaggtgtgctagctaaGGTTGAGGCAAAAGTATGACTCGAGTTCGTGCACAATATCTTTCATCTTTGCTACTGTGCGCATAATGCTATTCTGTTTACGGCTCCACTGTGTATCTTGGGGTTAACATCTGTAACATACTTATGCCCTCCAGGATAATTACTTATTTGACTGATGGGTGTTAGAGGAGATCCAGAGAGCATTGATGTTCCTCAAGGTCATAGAGGAATTTACACTCACCTGTGAGACAAGCAGCTGGAGGGCGTGCTCAAAAGAGCGCATGAGCCTCTGCAGCGTGGCCGGGTTGGCGATGCTGGCTTGGCACGCCCTCACCTCTGGTAGTTGCCTCATCTTCCCAGCAAT
>TU1208972
GGGGTCGTCCCCTCCAATCTGTCCCATGATGCCTTCCATCCACATGAGATGCTCACGCACCACTGAGAAGAACTGGACCTTGTCTGTCACCGAGGTGACCTGCACGCGACTGGCCTCACAGGAAACCAGCAACTCCTTCCATgctgacatcacttcctgttccTTGCTCATGATGGCCTCTGCCTTTTCCCCGGCGTAGATGGCCCTCAGCTGGGCCGCGTTCTCCTGCAGCTGCCTTAC
>TU1208974
GCGTTATTGCATAACATGAATGGGACCATACACCCTACAGTATGTGCAAGCCAAGAAGGAATTAGCTCAACTAGGGGTACTGAAATGGAATCTAAAATAgaacattacatatacattacagaTACAGTTATTTTTTACCCGTAAATTAAGCAGAGCCTATTTCTCAAGTCAAGTATCAGAGGTATGAGATTAACAAAATGGCTGACAATTAGACTTCAGTTCAGGTAAGGAGACCTTCAATTACTTACCTGGGGTCGTCCCCTCCAATCTGTCCCATGATGCCTTCCATCCACATGAGATGCTCACGCACCACTGAGAAGAACTGGACCTTGTCTGTCACCGAGGTGACCTGCACGCGACTGGCCTCACAGGAAACCAGCAACTCCTTCCATgctgacatcacttcctgttccTTGCTCATGATGGCCTCTGCCTTTTCCCCGGCGTAGATGGCCCTCAGCTGGGCCGCGTTCTCCTGCAGCTGCCTTAC

Function

NR:

description
spectrin beta chain, non-erythrocytic 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1208973 False 674 lncRNA 0.51 1 31879227 31879900
TU1208972 False 240 lncRNA 0.58 1 31879661 31879900
TU1208974 True 490 lncRNA 0.47 1 31879661 31880150

Neighbor

gene id symbol gene type direction distance location
LOC110539140 LOC106567939 coding downstream 39209 31837886 ~ 31840018 (-)
LOC110536848 LOC106568063 coding downstream 140853 31713248 ~ 31738374 (-)
LOC110537443 LOC106603553 coding downstream 545799 31304923 ~ 31333428 (-)
LOC110537441 LOC106567928 coding downstream 644189 31229547 ~ 31235038 (-)
LOC110537440 LOC106567926 coding downstream 663728 31206763 ~ 31215499 (-)
LOC110537451 NA coding upstream 17460 31897610 ~ 31900587 (-)
LOC118937661 LOC106567942 coding upstream 79477 31959627 ~ 31961527 (-)
LOC110537458 LOC106567946 coding upstream 257849 32137999 ~ 32300172 (-)
LOC110537459 LOC106567948 coding upstream 424047 32304197 ~ 32323673 (-)
LOC110537460 LOC106567949 coding upstream 453814 32333964 ~ 32344103 (-)
G1061269 LOC106567935 non-coding downstream 379 31878624 ~ 31878848 (-)
G1061268 LOC106567935 non-coding downstream 1674 31877286 ~ 31877553 (-)
G1061264 LOC106603546 non-coding downstream 3435 31875537 ~ 31875792 (-)
G1061267 NA non-coding downstream 4813 31874178 ~ 31874414 (-)
G1061255 NA non-coding downstream 13803 31864127 ~ 31865424 (-)
G1061273 NA non-coding upstream 2098 31882248 ~ 31882755 (-)
G1061275 LOC106603546 non-coding upstream 4074 31884224 ~ 31885768 (-)
G1061276 NA non-coding upstream 15365 31895515 ~ 31895877 (-)
G1061278 NA non-coding upstream 21528 31901678 ~ 31902178 (-)
G1061259 NA non-coding upstream 34016 31914166 ~ 31916223 (-)
G1059610 NA other downstream 808367 31067585 ~ 31070860 (-)
LOC110537432 NA other downstream 1105420 30738076 ~ 30773877 (-)
LOC110537425 LOC106567906 other downstream 1242505 30633836 ~ 30638038 (-)
LOC110537417 rnasek other downstream 1427014 30447386 ~ 30452456 (-)
G1059183 NA other downstream 1543971 30334827 ~ 30335256 (-)
G1061331 NA other upstream 111060 31991210 ~ 31992555 (-)
G1062051 NA other upstream 1159335 33039485 ~ 33086066 (-)
G1062603 NA other upstream 1632775 33512925 ~ 33513375 (-)
med13a med13 other upstream 1637615 33419083 ~ 33532690 (-)
LOC110537478 NA other upstream 1826322 33667535 ~ 33707659 (-)

Expression


Co-expression Network