G1061275 (LOC106603546)


Basic Information

Item Value
gene id G1061275
gene name LOC106603546
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 31884224 ~ 31885768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1208980
GTTTGTCAGAGCCTTCCTTGGCTGACTCCATGTCGCTGGAGTCGTCCTGCTTTGGTGTCCTCGCCTTCCCACTGCCCTCCTGCTCGCTGGACGACTGCCTCTCCAGGCGTCGCCTATAGCGCTCCTGACGCACGATCATTGGCAGCTCGTTGAGCCGCGCCTGGATCTCCTGTTCACTGGAGGTCTGGCGGCCCAGCTTGTACTCCCTCTCCCGCCGCAGGTGGTCCATCTGGGGGTCGGAGCGGCTGCCGCGGGGGTCCCTTTGAAGCCTGCCATGGAGGAGCTCCAGGCCGGACTCTGGCCCGATCATGTCTACCATGGGGATGTCCCCAAACTGTTCCCTCTGCGCCCTGCTGGCCTCCAGGAGGGGGTTGACAGCCTTGTGGATATGGTTGATCCTGGGCTGCATGCAGTCGGCTTTCAGATGCTGCCACGCATATGCCATTTTGGGGTCCATGACCCCACCGCTTTGAGGCAGATAGCTAGAACTACCCTTACCTCCACTACCTTGGATTTGCGCAAGGTACCCTGAACTACCCATACCCCCACTACTTAGATTTTGTGCAAGGTAGCCTGAGCTACCCATACCACCACTATTTTGATTTTGCGCAAGGTACCCTGAACTACCCATAATTCCACTACATTGGTTTTGCGCAAGGAAGCCTGAACTACCCATAACCCCACTACCTTGGTTTTGAGCCAGGTAGCCTGAACTACCCATACCACCACTGCTTTGATGGTTTTGAGCCAGGTAGCCTGAACTACCCATACTCCCACTACTTAGATTTTGTGCAAGGTAGCCTGAGCTACCCATACCACCACTGTGTTGATTTTGCGCAAGGTAGCCTGGACTAACTATACCCCCAATACTTTGATtttgcggcaggtagcctgaacTACCCAAACCCCCACTACTTTGATTTTGCGTTAGGTAGCCTGGACTACCCGTACCCCCACTACTTTGATtttgcggcaggtagcctagactACCCATACTCCCACTGCTTTGATTTTGCGGCAGGTAACCTGGACTACCCATACCACCACTACTTTGATTTTGAGGTAGGTAGCCTGGACTAACCATACCCCCACTGCTTTGATGGTTCAGTCCAAGGTAGCCAGAACTATCCACTGGCGGGAGGGCAGTCTGATGGTTCACTCCAAGGTAACTGGAGCTGCTGTCCACACCTCCACAGGCCTGATGGTTTAGCCCAGGGTAGTTAGAACTCTCCAACCCCCCGCTGCTGCTCTGATGGTCCAGTCCATGGTAACTGGAGCCATTCATGACAGGAGTGTAGCTGGCCATGGTAGAACCCAACCTCTGGGATGCAGTGGAGGCAGAGGCAGCCATCCCTAGACTAGTCTGCTTGGGCCTGGGCTCAATATGCAGCTGGACCGTCTGCCTCAGCAGAGTTGAGGTAGCAAGGGGAAAGGTCGGAGTGAGGCAGGACGATGGGAACATCCTCCGACTGGAGAGTGGCATTGGGGCAGGCTtgctgc
>TU1208981
GTTTGTCAGAGCCTTCCTTGGCTGACTCCATGTCGCTGGAGTCGTCCTGCTTTGGTGTCCTCGCCTTCCCACTGCCCTCCTGCTCGCTGGACGACTGCCTCTCCAGGCGTCGCCTATAGCGCTCCTGACGCACGATCATTGGCAGCTCGTTGAGCCGCGCCTGGATCTCCTGTTCACTGGAGGTCTGGCGGCCCAGCTTGTACTCCCTCTCCCGCCGCAGGTGGTCCATCTGGGGGTCGGAGCGGCTGCCGCGGGGGTCCCTTTGAAGCCTGCCATGGAGGAGCTCCAGGCCGGACTCTGGCCCGATCATGTCTACCATGGGGATGTCCCCAAACTGTTCCCTCTGCGCCCTGCTGGCCTCCAGGAGGGGGTTGACAGCCTTGTGGATATGGTTGATCCTGGGCTGCATGCAGTCGGCTTTCAGATGCTGCCACGCATATGCCATTTTGGGGTCCATGACCCCACCGCTTTGAGGCAGATAGCTAGAACTACCCTTACCTCCACTACCTTGGATTTGCGCAAGGTACCCTGAACTACCCATACCCCCACTACTTAGATTTTGTGCAAGGTAGCCTGAGCTACCCATACCACCACTATTTTGATTTTGCGCAAGGTACCCTGAACTACCCATAATTCCACTACATTGGTTTTGCGCAAGGAAGCCTGAACTACCCATAACCCCACTACCTTGGTTTTGAGCCAGGTAGCCTGAACTACCCATACCACCACTGCTTTGATGGTTTTGAGCCAGGTAGCCTGAACTACCCATACTCCCACTACTTAGATTTTGTGCAAGGTAGCCTGAGCTACCCATACCACCACTGTGTTGATTTTGCGCAAGGTAGCCTGGACTAACTATACCCCCAATACTTTGATtttgcggcaggtagcctgaacTACCCAAACCCCCACTACTTTGATTTTGCGTTAGGTAGCCTGGACTACCCGTACCCCCACTACTTTGATtttgcggcagGTAACCTGGACTACCCATACCCCCACTGCTTTGATTTTGCGGCAGGTAACCTGGACTACCCATACCACCACTACTTTGATTTTGAGGTAGGTAGCCTGGACTAACCATACCCCCACTGCTTTGATGGTTCAGTCCAAGGTAGCCAGAACTATCCACTGGCGGGAGGGCAGTCTGATGGTTCACTCCAAGGTAACTGGAGCTGCTGTCCACACCTCCACAGGCCTGATGGTTTAGCCCAGGGTAGTTAGAACTCTCCAACCCCCCGCTGCTGCTCTGATGGTCCAGTCCATGGTAACTGGAGCCATTCATGACAGGAGTGTAGCTGGCCATGGTAGAACCCAACCTCTGGGATGCAGTGGAGGCAGAGGCAGCCATCCCTAGACTAGTCTGCTTGGGCCTGGGCTCAATATGCAGCTGGACCGTCTGCCTCAGCAGAGTTGAGGTAGCAAGGGGAAAGGTCGGAGTGAGGCAGGACGATGGGAACATCCTCCGACTGGAGAGTGGCATTGGGGCAGGCTtgctgc

Function

NR:

description
spectrin beta chain, non-erythrocytic 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1208980 False 1500 lncRNA 0.55 2 31884224 31885768
TU1208981 True 1500 lncRNA 0.56 2 31884224 31885768

Neighbor

gene id symbol gene type direction distance location
LOC110539140 LOC106567939 coding downstream 44206 31837886 ~ 31840018 (-)
LOC110536848 LOC106568063 coding downstream 145850 31713248 ~ 31738374 (-)
LOC110537443 LOC106603553 coding downstream 550796 31304923 ~ 31333428 (-)
LOC110537441 LOC106567928 coding downstream 649186 31229547 ~ 31235038 (-)
LOC110537440 LOC106567926 coding downstream 668725 31206763 ~ 31215499 (-)
LOC110537451 NA coding upstream 11842 31897610 ~ 31900587 (-)
LOC118937661 LOC106567942 coding upstream 73859 31959627 ~ 31961527 (-)
LOC110537458 LOC106567946 coding upstream 252231 32137999 ~ 32300172 (-)
LOC110537459 LOC106567948 coding upstream 418429 32304197 ~ 32323673 (-)
LOC110537460 LOC106567949 coding upstream 448196 32333964 ~ 32344103 (-)
G1061273 NA non-coding downstream 1469 31882248 ~ 31882755 (-)
G1061270 LOC106567935 non-coding downstream 4074 31879227 ~ 31880150 (-)
G1061269 LOC106567935 non-coding downstream 5376 31878624 ~ 31878848 (-)
G1061268 LOC106567935 non-coding downstream 6671 31877286 ~ 31877553 (-)
G1061264 LOC106603546 non-coding downstream 8432 31875537 ~ 31875792 (-)
G1061276 NA non-coding upstream 9747 31895515 ~ 31895877 (-)
G1061278 NA non-coding upstream 15910 31901678 ~ 31902178 (-)
G1061259 NA non-coding upstream 28398 31914166 ~ 31916223 (-)
G1061258 stt3a non-coding upstream 44790 31930558 ~ 31932634 (-)
G1061286 NA non-coding upstream 51791 31937559 ~ 31937794 (-)
G1059610 NA other downstream 813364 31067585 ~ 31070860 (-)
LOC110537432 NA other downstream 1110417 30738076 ~ 30773877 (-)
LOC110537425 LOC106567906 other downstream 1247502 30633836 ~ 30638038 (-)
LOC110537417 rnasek other downstream 1432011 30447386 ~ 30452456 (-)
G1059183 NA other downstream 1548968 30334827 ~ 30335256 (-)
G1061331 NA other upstream 105442 31991210 ~ 31992555 (-)
G1062051 NA other upstream 1153717 33039485 ~ 33086066 (-)
G1062603 NA other upstream 1627157 33512925 ~ 33513375 (-)
med13a med13 other upstream 1631997 33419083 ~ 33532690 (-)
LOC110537478 NA other upstream 1820704 33667535 ~ 33707659 (-)

Expression


Co-expression Network