G1061331


Basic Information

Item Value
gene id G1061331
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 31991210 ~ 31992555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1209063
atgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaacaagcaagatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacttgtccacgacctcaaacagtcacactccaaactccactatggccaagaccaaagagctgttaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcacccagcggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacagggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgctagggactcaaatcctgcagtgccagatgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagatggggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaacttgttgtgtttggaggacaaagaacaccatacctactgtgaagcatgggggtggaaacatcatacgttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgattccaaacacactgcccggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatcccatagaaaatctttggagggagttgaaagtccatgttgcccagcaacagccccaaaacatcactgctctagatggggtctgcatggagaaatgggccaaaataccagcaacagtgtatgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatataacaaagtattgagataaacttgttattgaccaaatactaattttccaccataatttgcaaataaattcattaaaaatcctacaatgtgattttctggatttttttcttctcattttgtctgtcatagtgtaagtgtacctatgatgaaaactac
>TU1209066
cactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacttgtccacgacctcaaacagtcacactccaaactccactatggccaagaccaaagagctgttaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcacccagcggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacagggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgctagggactcaaatcctgcagtgccagatgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagatggggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaacttgttgtgtttggaggacaaagaacaccatacctactgtgaagcatgggggtggaaacatcatacgttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgattccaaacacactgcccggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatcccatagaaaatctttggagggagttgaaagtccatgttgcccagcaacagccccaaaacatcactgctctagatggggtctgcatggagaaatgggccaaaataccagcaacagtgtatgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatataacaaagtattgagataaacttgttattgaccaaatactaattttccaccataatttgcaaataaattcattaaaaatcctacaatgtgattttctggatttttttcttctcattttgtctgtcatagtgtaagtgtacctatgatgaaaactac
>TU1209059
atgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaacaagcaagatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacttgtccacgacctcaaacagtcacactccaaactccactatggccaagaccaaagagctgttaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcacccagcggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacagggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgctagggactcaaatcctgcagtgccagatgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagatggggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaacttgttgtgtttggaggacaaagaacaccatacctactgtgaagcatgggggtggaaacatcatacgttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgattccaaacacactgcccggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatcccatagaaaatctttggagggagttgaaagtccatgttgcccagcaacagccccaaaacatcactgctctagatggggtctgcatggagaaatgggccaaaataccagcaacagtgtatgaaaaccttgtgaagacttacagaaaacgtttgacctctgtca
>TU1209065
cactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacttgtccacgacctcaaacagtcacactccaaactccactatggccaagaccaaagagctgttaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcacccagcggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacagggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgctagggactcaaatcctgcagtgccagatgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagatggggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaacttgttgtgtttggaggacaaagaacaccatacctactgtgaagcatgggggtggaaacatcatacgttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgattccaaacacactgcccggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatcccatagaaaatctttggagggagttgaaagtccatgttgcccagcaacagccccaaaacatcactgctctagatggggtctgcatggagaaatgggccaaaataccagcaacagtgtatgaaaaccttgtgaagacttacagaaaacgtttgacctctgtca
>TU1209064
cactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacttgtccacgacctcaaacagtcacactccaaactccactatggccaagaccaaagagctgttaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcacccagcggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacagggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgctagggactcaaatcctgcagtgccagatgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagatggggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaacttgttgtgtttggaggacaaagaacaccatacctactgtgaagcatgggggtggaaacatcatacgttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaagaatgaatggggccatgtatcgtgagattttga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1209063 False 1346 TUCP 0.43 1 31991210 31992555
TU1209066 False 1232 TUCP 0.44 1 31991210 31992441
TU1209059 False 1172 TUCP 0.46 1 31991384 31992555
TU1209065 False 1058 TUCP 0.47 1 31991384 31992441
TU1209064 True 741 TUCP 0.46 1 31991701 31992441

Neighbor

gene id symbol gene type direction distance location
LOC118937661 LOC106567942 coding downstream 29683 31959627 ~ 31961527 (-)
LOC110537451 NA coding downstream 90623 31897610 ~ 31900587 (-)
LOC110539140 LOC106567939 coding downstream 151192 31837886 ~ 31840018 (-)
LOC110536848 LOC106568063 coding downstream 252836 31713248 ~ 31738374 (-)
LOC110537443 LOC106603553 coding downstream 657782 31304923 ~ 31333428 (-)
LOC110537458 LOC106567946 coding upstream 145444 32137999 ~ 32300172 (-)
LOC110537459 LOC106567948 coding upstream 311642 32304197 ~ 32323673 (-)
LOC110537460 LOC106567949 coding upstream 341409 32333964 ~ 32344103 (-)
umodl1 LOC106568047 coding upstream 397979 32390534 ~ 32401265 (-)
LOC110537466 LOC106567955 coding upstream 422008 32414563 ~ 32416279 (-)
G1061325 NA non-coding downstream 12061 31978924 ~ 31979149 (-)
G1061324 NA non-coding downstream 12507 31978329 ~ 31978703 (-)
G1061319 NA non-coding downstream 15675 31975310 ~ 31975535 (-)
G1061315 NA non-coding downstream 19901 31970993 ~ 31971309 (-)
G1061314 NA non-coding downstream 20828 31970149 ~ 31970382 (-)
G1061430 NA non-coding upstream 130311 32122866 ~ 32125150 (-)
G1061483 NA non-coding upstream 195314 32187869 ~ 32271180 (-)
G1061574 LOC106567950 non-coding upstream 384659 32377214 ~ 32380107 (-)
G1061666 NA non-coding upstream 492163 32484718 ~ 32485654 (-)
G1061676 NA non-coding upstream 514380 32506935 ~ 32507183 (-)
G1059610 NA other downstream 920350 31067585 ~ 31070860 (-)
LOC110537432 NA other downstream 1217403 30738076 ~ 30773877 (-)
LOC110537425 LOC106567906 other downstream 1354488 30633836 ~ 30638038 (-)
LOC110537417 rnasek other downstream 1538997 30447386 ~ 30452456 (-)
G1059183 NA other downstream 1655954 30334827 ~ 30335256 (-)
G1062051 NA other upstream 1046930 33039485 ~ 33086066 (-)
G1062603 NA other upstream 1520370 33512925 ~ 33513375 (-)
med13a med13 other upstream 1525210 33419083 ~ 33532690 (-)
LOC110537478 NA other upstream 1713917 33667535 ~ 33707659 (-)
cenpv LOC107676655 other upstream 2764699 34755024 ~ 34759345 (-)

Expression


Co-expression Network