G1062233


Basic Information

Item Value
gene id G1062233
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 33220480 ~ 33220800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1210032
attctgatgagaagtaacttacaaacatatgatgaatataaaacatcttacctatgttaccaaccaattctgacTATTCCCCAACACACCCCTCTCTACCTTCTCATCCCCTGTATCcactgctaaagccactttctatcactctaaatgtcaagcttctgcctctaaccctaggaaactcttttccaccttctcctccctccttaatcatccacccactctccatccctcctccctctctgtggaTGAATTTGTCAAGAAGGTTGACTACATCCACTCCTCATTCACTCaacctattgagtccactggtctcactcacac

Function

NR:

description
uncharacterized protein LOC111192044

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1210032 True 321 lncRNA 0.44 1 33220480 33220800

Neighbor

gene id symbol gene type direction distance location
cxadr LOC106567957 coding upstream 605490 32555056 ~ 32614990 (+)
btg3 btg3 coding upstream 665824 32546918 ~ 32554656 (+)
LOC110537469 LOC106567749 coding upstream 685794 32504245 ~ 32534686 (+)
LOC110537467 LOC106567956 coding upstream 749109 32458471 ~ 32471371 (+)
prdm15 LOC106567952 coding upstream 765667 32438318 ~ 32454813 (+)
LOC110537474 NA coding downstream 281134 33501934 ~ 33513654 (+)
rnft1 LOC106567963 coding downstream 378139 33598939 ~ 33624023 (+)
ptrh2 ptrh2 coding downstream 562014 33782814 ~ 33784617 (+)
LOC110537484 LOC106567971 coding downstream 652215 33873015 ~ 33880271 (+)
abr LOC106567975 coding downstream 913708 34134508 ~ 34360009 (+)
G1062215 NA non-coding upstream 12555 33207490 ~ 33207925 (+)
G1062207 NA non-coding upstream 19331 33200845 ~ 33201149 (+)
G1062204 NA non-coding upstream 21166 33199065 ~ 33199314 (+)
G1062148 NA non-coding upstream 43343 33160661 ~ 33177137 (+)
G1061153 NA non-coding upstream 134427 33039534 ~ 33086053 (+)
G1062234 NA non-coding downstream 1235 33222035 ~ 33222248 (+)
G1062244 NA non-coding downstream 13669 33234469 ~ 33234855 (+)
G1062265 NA non-coding downstream 26353 33247153 ~ 33247358 (+)
G1062343 NA non-coding downstream 112181 33332981 ~ 33333240 (+)
G1062401 NA non-coding downstream 134722 33355522 ~ 33357058 (+)
G1060470 NA other upstream 1409133 31811062 ~ 31811347 (+)
G1059685 LOC106567926 other upstream 2011123 31207629 ~ 31209357 (+)
G1059091 NA other upstream 2213414 31000227 ~ 31007066 (+)
LOC110537434 NA other upstream 2341369 30848508 ~ 30879117 (+)
G1058787 LOC106567901 other upstream 2703590 30516081 ~ 30516890 (+)
G1062404 NA other downstream 138934 33359734 ~ 33366249 (+)
G1062537 NA other downstream 287519 33508319 ~ 33508863 (+)
G1062648 NA other downstream 437478 33658278 ~ 33661949 (+)
ubb ubb other downstream 1546224 34766968 ~ 34770882 (+)
LOC110537506 LOC106567992 other downstream 1755492 34964222 ~ 34982028 (+)

Expression


Co-expression Network