XLOC_002963 (dre-let-7c-2)


Basic Information

Item Value
gene id XLOC_002963
gene name dre-let-7c-2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38072077 ~ 38072168 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005461
GTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTCGAATGACACCATGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGTACAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000080238

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005461 True 92 miRNA 0.47 1 38072077 38072168

Neighbor

gene id symbol gene type direction distance location
XLOC_002960 NA coding downstream 46110 37729311 ~ 38025967 (-)
XLOC_002961 NA coding downstream 182516 37865419 ~ 37889561 (-)
XLOC_002959 si:dkey-65j4.2 coding downstream 584356 37485403 ~ 37487721 (-)
XLOC_002958 NA coding downstream 595832 37418234 ~ 37476245 (-)
XLOC_002957 CT573231.1 coding downstream 714774 37352480 ~ 37357303 (-)
XLOC_002964 usp25 coding upstream 95990 38168158 ~ 38243851 (-)
XLOC_002965 nrip1b coding upstream 184388 38256556 ~ 38316161 (-)
XLOC_002966 CU914142.1 coding upstream 303966 38376134 ~ 38376253 (-)
XLOC_002967 NA coding upstream 340762 38412930 ~ 38498072 (-)
XLOC_002968 BX000451.3 coding upstream 362215 38434383 ~ 38434499 (-)
XLOC_002955 BX323076.2 non-coding downstream 1029845 37041078 ~ 37042232 (-)
XLOC_002969 NA non-coding upstream 439740 38511908 ~ 38526710 (-)
XLOC_002970 NA non-coding upstream 591825 38663993 ~ 38664234 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G429552 NA non-coding CI01000304 null 18367718 ~ 18368793 (+)