G1066209


Basic Information

Item Value
gene id G1066209
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36184711 ~ 36187509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1214376
aaaagtaagaaacaaaaaaaaatacatctaaaattttttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcaataaacaaattcgtgatggtacctgcccattaaaacatattccaaatgcacagtgactttgaaaaagtagggaaacaaaaaaaaatacatctaaaaaattttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaatttgtgatggtacctgcccattaaaacatattccaaatgcacagtgactttgaaaaagtaagaaaccaaaaaaaatacatctaaaattttttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattaaaacatattccaaatgcacagtgactttgaaaaagtaaggaaacaaaaaaaaatacatctaaaaaatgttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattaaaacatattccaaatgcacagtgactttgaaaaagtaaggaaacaaaaaaaaatacatctaaaaaattttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattaaaacatattccaaatgcacagtgactttgaaaaagtaagaaacaaaaaaaaatacatctaaaaaattttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattaaaacatattccaaatgcacagtgactttgaaaaagtaagaaacaaaaaaaaatacatctaaaattttttgagcatgacaaattcgtgatggtacctgcccattaaaacatattccaaatgcacagtgactttgaaaaagtaagaaacaaaaaaaaatacatctaaaattttttgagcatgacaaattcgtgatggtacctgcccattgaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaattcgataaacaaattcgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatcccaaaaaatgttgggtaaccagctgcatattttagatcacaagcttgaattttgagcatgacaaattcgtgatggtacctgcccattaaaacatattgcaaatggacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatccccaaattttttttttgggttaccagttgcatattttagatcaccaggtgcacatttcaggtcaccaggtgcacatttcagatcaccaggtgcacggaggaaaatatttacttttgactttgacttttgacttcctatgacatcatattgcaaatggagaaaacatatgccttatgcacaagtaaaacaaaaagaaatatgtaatacaagttgaccaaggtatagtttgagcaaagtaaagtttgaattttgagcatgacaaattcgtgatggtacctgcccattaaaacatattgcaaatggacagtgactttgaaaaagtaaggaaacataaacaaaaaaacatcccaaaattttttttttgggttaccagttgcatattttagatcaccaggtgcacatttcaggtcaccaggtgcacatttcagatcaccaggtgcacggaggaaaatatttacttttgactttgacttttgacttcctatgacatcatattgcaaatggagaaaacatatgccttatgcacaagtaaaacaaaaagaaatatgtaatacaagttgaccaaggtatagtttgagcaaagtaaagtttgaattttgagcatgacaaattcgtgatggtacctgcccattaaaacatattgcaaatgcacagtgactttgaaaaagtaaggaaacataaacaaaaaaaatcaaaaacattttgttgcacattttagatcatcagttgcacggaggaaaatcgttacttttgactttgacttttgacttcctatgacatcatattgccaatggagaaaacatatgccttatgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1214376 True 2452 lncRNA 0.33 2 36184711 36187509

Neighbor

gene id symbol gene type direction distance location
LOC110537510 mfap3 coding downstream 783484 35396884 ~ 35401227 (-)
LOC110537509 galnt10 coding downstream 925774 35122172 ~ 35260534 (-)
LOC110537508 LOC106567994 coding downstream 1069906 35071760 ~ 35114805 (-)
LOC110537504 LOC106567991 coding downstream 1170438 34979146 ~ 35014273 (-)
LOC110537503 NA coding downstream 1221752 34961595 ~ 34962959 (-)
LOC110537516 LOC106568002 coding upstream 105198 36292707 ~ 36310874 (-)
LOC110537517 wwc1 coding upstream 123606 36311115 ~ 36358023 (-)
LOC110537518 LOC106568005 coding upstream 210089 36397598 ~ 36400542 (-)
LOC110539141 NA coding upstream 224743 36412165 ~ 36413564 (-)
LOC110537521 LOC106568007 coding upstream 325684 36513193 ~ 36620615 (-)
G1066177 NA non-coding downstream 9112 36120494 ~ 36175599 (-)
G1066181 NA non-coding downstream 54867 36124245 ~ 36129844 (-)
G1066165 NA non-coding downstream 81483 36102720 ~ 36103228 (-)
G1066068 NA non-coding downstream 225396 35959063 ~ 35959315 (-)
G1066066 NA non-coding downstream 227609 35956798 ~ 35957102 (-)
G1066247 NA non-coding upstream 70181 36257690 ~ 36257910 (-)
G1066248 NA non-coding upstream 70737 36258246 ~ 36258474 (-)
G1066253 NA non-coding upstream 78458 36265967 ~ 36266309 (-)
G1066254 NA non-coding upstream 79651 36267160 ~ 36267402 (-)
G1066257 NA non-coding upstream 82578 36270087 ~ 36270311 (-)
G1066163 NA other downstream 85237 36099030 ~ 36099474 (-)
G1066054 NA other downstream 245140 35939243 ~ 35939571 (-)
G1065969 NA other downstream 374317 35792355 ~ 35810394 (-)
G1064912 mrpl22 other downstream 700207 35476837 ~ 35484504 (-)
G1067390 LOC106568016 other upstream 721922 36909431 ~ 36912757 (-)
G1067426 NA other upstream 749810 36937319 ~ 36937979 (-)
LOC110537534 LOC106568022 other upstream 832492 37019987 ~ 37039930 (-)
LOC110537540 LOC106567738 other upstream 1318371 37505206 ~ 37507238 (-)
LOC110537546 ppm1e other upstream 1415656 37603158 ~ 37667366 (-)

Expression


Co-expression Network