G1066335


Basic Information

Item Value
gene id G1066335
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36467498 ~ 36473377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1214513
TTCCAACTCATATGTTACATGGAGGTCCAGTTTGACTGGCCATGACTAGTTTCACAGGCACCTATGGAGACGGGTCAGAGTCAGACAGTACGAGTTGATTtcagaggagagcgagagaaccAAAAGAGCTCAAACAAACACCACATCAGAGTGATACATAGCATGCACATGGCACATTTACATATGATCATCACCTCCAGGACATTTATGGCActtggtgtcaaaggaaggccaagaagatcattagGGACCTCAGCCACACAAGCCACggtctgttcactctgctaccatctaGCAGACAGAGAaggtacaggtgcatcagagcCAGGACCGAGACaatgagaaacagcttctatcacaaggccatcagactgttgaacagccattACTAGCCGTCTACCTGCCAGGTACTCTGCATGGTGAGACTAATGAACCATGTACAGAGAGACATTGAACTCTGGTCATTTCATATACTGTTGTTTACTcactatgtatatactgtattctcgaCATAGCTCATCCTAATATACCTAATACTGTACATACCATTTTATTTTCAAAATTAtaaactgtctatacacaccacgtATTAACATTTATATTCTGGATTCTGACACTGCTCACTATCTACTTTGGATTGTTAATTGGACTCGTTCTGACATTTTTTTATACTTTTTTCattatttgtgtattagtatTGTATTTGCTagacattctactgcactgttggagctagtaacatcaGCATTTCACATCTCTGTACACGACCAATACGTTTTTATTTGATTATCATCATTATCGACTCCTTTCATCAATCATCATCTCGGTAGCTTCCATTTGGCATGTTAACACAGTAGGACAACAGATCTAATGGTCTCTAGAGACACACACAGTATGACATGGGGCCTAGCAGAGGACAGGGTGGGAAGGAAATTGAGTAACAGAGGATGGTTACATGAATGAAGTCTCCAACCTTCCAGAGCTTAGAGAGATATCACACGGAACGCCAAAGCAGAGCTGCATTACAATGCAACGTTGAAACAAATGTGACATGGATTCAGCTACAATTAATCAGACAATGAAGACTAGTGCTTGGTTTAATATGGTATTTAAAAGGATATGGACATTGGACACAATATAATTTCAGATAAAAAATGTTCACCTCATACACTTGTCAATTCTCTCCCCGTGAACTGTAACAAAGCGTACCTCCTAATTGTGAGGGCTTAGTGCAGTCTGAACATAGTtggcaaaatgtgaagagtatggCAACATCAAAAATATGACTGAATATTTGAACTGAAACCAACAGTGTAAGGTAAAAACATTAAGCACATGGTCAAAAAATAAATACTGAAATAAAATGCGGATGTACAGGTAGATAATGTAAGGAAGCACCTTAATAAGGACATGGCAATTTTGAATGCCTAGCATTAGCATAGCCTAGCATTACAGTCTAGACTCACAGAAGGCTATAACAACAAGAGTTAAGAGCGCAACATAAAATAACAAAAGCAACAGATAAATATTAAAAGGGTAAGCAAACGTCCCTGAACCCTTAAAGTCAATGTACTGTAACTTGTGTGACACATGAACCTGACTTCATTATCCAGCGCTAGCAGATGCTAACCGCCATTTCCGCTTCACAGATAAAGCCTTTTCACATAGGAAACAGCTCAGTCCATGACTCAATACAAGACAAGCACTTCATTCGTTTTGCCCCATTATTGTGCGCATGCATTACATGGCCaagaatatgtggacacctgctcgtcgaacatctcattccaaaatcatgggaattaatatggagttggtcccccctttgcagctataacagcctccactcttctgggaaggctttacattagatgatggaacattgctgaggaGACTTGCTTCCCTTCAGCCACAAGAGAATTATTGAGGTTGGGTACAGATGTTGGGCGATTTGGCccggctcgcagtcggcgttccaattcagtccaaaggtgtttgatgtcagggctctgtgcaggcatcATGTAGAATATGCTGTAGCGTtgggatttcccttcactggaactagggggcctagcccgaaccatgaaaaacagccccagaccattattcctccaccaaactttacagttggcactatgcattcgggcaggtagcgttctcctggcgtcCGTCAGACTGCTAgctggaaacccatttcatgaagctcccaacaaacagtgattgtgctgacgttgcttccagaggcagtttggaactgagtagtgagcgttgcaaccgaggacagatgatttttacgcgctgtGCGCttggtggtcccattctgtgagcttgtgtggcctaccactttgcggatttccacaataacagcacttacagttgaccggggcagctctagcagggcagaaaaatGTCCttactaacttgttggaaaggtaacatcctatgacggtgcccgGCGATTCACTGAGCTCTCAGTAGTATGGGCCTTTCTAACGCCAATGtttatctatggagattgcatggctgtgtgctcgattttatacacttgtcagcaatgggtgttgttgaaatagccgaatcaactaatttgaaggggtgtTgttgaaatagccgaatcaactaatttgaaggggtgtccacatacttatggccatgtagtgtacattGTACTTTGACTTGTTGTATTCATCCTATTCAGTGCTTTAATTGTtggtactctactgtattaactACGTCATTATTTACTGAGGTAAAAATTAAGTATGTGTTTGGTAAAATGTAACTGTTCTCATACCCACTGTCAAAACCTGTTGCTTAGTGCTCTCCTGTTGGGCTTGGGAAACTAACAGAGATTTAGACAACCTCCTGACATTCAGAGAACGTTCAGAGAACTCCCTTTAGTACAGTAGCATGTTCACTCATCATGAGCAGTACCTTACCCACtaggcacagacatcagttcaacatctagttttgagttacatttggttgagttgtcaactaatgtgaattccaCACAAAATCTCACCAGGACATTGGATTTAGAATAAAAGTTGGGTGAAGAATccactcagttttccacattAATTCAACAtcacgtggaaacaacattgatttaacCAGTTCTTGCCAACGTGGGTACCCACTTTGCTCAACGTTGAGAATTTAAAGCACATTTAAAGGAAATAACTGCTGCTTGTATAGTTCCGTCGGAGCCACTGGCTTAAATCTATTCTCTAACTTCTATTTTCTGTTGACATGGAGACCTGAATCACACAATTCATTTGTTAACTGATCGACAAGTTAATAGGATATTTACTGTATTGCAAAAATATTTAATTGTGcttggttgtcaacgcaaccaaaaaTAGACATGAAGGAGATGTATCCTCAGATAGTGGCACGGATGAAACtatctggctttaattccagtttgtctacaaatgtaTACTTACAATTTGAATTAATAGGGCTAAATCAGATGAAACATTAAGTGCACtttaaatacagtttgatttaatTTAGTTATTGTTTAACTtacatttttggttgagatggagacatgaatccaactTTATATTTTACTAACTTGTAGAttccatttgaaatcaaccaaagcttgaatcgtgtgttgaattgaaacaatagcagTTGATGACTTTAGAAatgctatataggcctaaatatcatcattgatgatatatggtcatatttcatttgctctgttaaacctacccttgACTTTGATAACGGTGAATATATCAACAATCATTCTCACAATAGCACATTAGTAACAGTTGATGACAAATATCAAAGTTTAGCAGggcttggtaaaaaaaaaatccttaagTGCGTCAATCtaattaacaaacaaaaaaaatccatcaGTTTCTGTTTTTTTGCATCTCTATCCGCCTATGTCGACCTCCTGCCACTGCAGTAGAAAATGGCAGAGCTACGgtgctgtttgtcagaccaggatacatctaaaaaaaaaatctgtcttctTACAAAAACGTCTGAACGGTTTGGCTTACTAACGAATATTAcaactctatggaaagatgaaaCTAAACAAACACACTGGTCTGAATGTAACCCAGTACCAGTTTTATAAAATGAACGGAAggttggaggtagttttgtgccaacaataATAGGGGTTAAATGTGTGttcaaaaaacaaaaatatttcctgagctttcttatatctcctataAATAGGACAGACAcatcaaaaccttattccttatgtcTGTTTTCCCACGTATGAATGCGTTACTCAATGCGCTATAGTGGTGAAGGCCAAAATCAAGTCGGGatacctacagTTGTTTTCTTATAGTGGATATTACGTTGTTTCAAAGGTATAAATTCAACATATTTAGAAAATTGGTTATGAAAtattcctgtggttgaaattaCAACAGTTgactacttttttcaaatccaatgtattttccacgtcacaatacgttgacTTAACCAGTTTGTGCCAAGTGGGTACAGAGTCTAGTGGTTATGGTGacacatgcgtgcacacacaaaAAACGTCAGTGCATTGCAAAAAGAAAGTGTCAGAGGTGTTTCAtggatgcagagacagacagaagccCTCCCTCTCAGTGTGTAAGCTTGGCTCAGGAGCACATTGTAAAGAGAAATCATACTCATCTTACTTTCAGTCCTATTCTAGTTTCATGGTGGAACTGTTATTGTTGTTATAACTTTACACCGGTAAAAAAAACATtgtaaaataaacaaaagtaGCATAACTTTACACTGTACAGTACGGTATAGACTGGAATGTAGGCAAGTTAATTTGAATCACATACGATAACATGATTTGATAATGAGAGACGAGGATGGTAGGAGGAGTTTGAGAGTCTCTTCCAATTTTCCTCGGAGTGCTGAGCTTTACATTGAGATGGTTTGAACTCTCGGTGACCCCTCCCCTTTGAACCTTCTTCCTCAGTCTGATAGAGTCTCTGGTAAGGAGGGTTCAGAGGGTGATACCATAGTCCCATAGTCTGTCAGGGAGCTCAGTCCCTCAGTCCTATTATAGTCCCACATTTACAAGGAGAATCCCACTGAGTTACACGATGAAGAGGAACACATGAGGtacagcagagggagggagagagagacgcagcaTGGTCTCAACCTACTAGACAGCTTTGTTAGATTTGATAAAATAATGGTAATTATATAGAGTACCATAAACTAATCAAAGGAACCTTGAATGGGAAGGAATTAACCATAAAAAATATTTGGAGGATGAAAACAAACCGGTTTGGTCATAAGTGCATCGCTTAATTAAACTCAAGTGCTCCGTGACAAACGTGTCATGGTAGAGGAAACTCCAGGCCATTCTCGGCTATCCACGTCTTACGAAAAAGGTAATTTCTTACAACTGAATTACTGTATTACAATgcagtttttttttgtcaatttacTTCTCTAGCTCATAATATGGTTGGGAACTAACATGCTTTCTACCTAAACTCAGATTCATTGGAAGACACACTTCGGACGCGAGTGTCACAAATTATACACTTGTTTGCACTTACATATGCAGTGTTTAGTCATATCTATTTGGTTTATATCAAGTGTCTCTAGATTGAACCCTAGAATGTACATAATGTATCACCTCATACCAAAAGTTCACCTTAGTCTTCAATTTCCTTTAAGCCTACAGTTCACACAACATTCCTAATTTGATTGCCTAGAATTACATgaagtaaataaaaataaaatataaa

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1214513 True 5765 lncRNA 0.39 3 36467498 36473377

Neighbor

gene id symbol gene type direction distance location
LOC110539141 NA coding downstream 53934 36412165 ~ 36413564 (-)
LOC110537518 LOC106568005 coding downstream 66956 36397598 ~ 36400542 (-)
LOC110537517 wwc1 coding downstream 109475 36311115 ~ 36358023 (-)
LOC110537516 LOC106568002 coding downstream 156624 36292707 ~ 36310874 (-)
LOC110537510 mfap3 coding downstream 1066271 35396884 ~ 35401227 (-)
LOC110537521 LOC106568007 coding upstream 39816 36513193 ~ 36620615 (-)
LOC110537522 LOC106568008 coding upstream 156382 36629759 ~ 36641133 (-)
LOC110537523 LOC106568009 coding upstream 171692 36645069 ~ 36654649 (-)
LOC110537524 LOC106568011 coding upstream 197127 36670504 ~ 36700574 (-)
LOC110537525 NA coding upstream 234142 36707448 ~ 36709032 (-)
G1066338 NA non-coding downstream 17688 36448196 ~ 36449810 (-)
G1066331 LOC106568006 non-coding downstream 23017 36414086 ~ 36444481 (-)
G1066315 NA non-coding downstream 88315 36378788 ~ 36379183 (-)
G1066257 NA non-coding downstream 197187 36270087 ~ 36270311 (-)
G1066438 LOC100136012 non-coding upstream 143166 36616543 ~ 36741034 (-)
G1066587 NA non-coding upstream 380262 36853639 ~ 36853868 (-)
G1066588 NA non-coding upstream 381073 36854450 ~ 36854703 (-)
G1066163 NA other downstream 368024 36099030 ~ 36099474 (-)
G1066054 NA other downstream 527927 35939243 ~ 35939571 (-)
G1065969 NA other downstream 657104 35792355 ~ 35810394 (-)
G1064912 mrpl22 other downstream 982994 35476837 ~ 35484504 (-)
LOC110537509 galnt10 other downstream 1206964 35122172 ~ 35260534 (-)
G1067390 LOC106568016 other upstream 436054 36909431 ~ 36912757 (-)
G1067426 NA other upstream 463942 36937319 ~ 36937979 (-)
LOC110537534 LOC106568022 other upstream 546624 37019987 ~ 37039930 (-)
LOC110537540 LOC106567738 other upstream 1032503 37505206 ~ 37507238 (-)
LOC110537546 ppm1e other upstream 1129788 37603158 ~ 37667366 (-)

Expression


Co-expression Network