G1067539


Basic Information

Item Value
gene id G1067539
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 37144123 ~ 37145885 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1215859
GCATCAAGAACATCAAATACATCCTCTCAAAGGTATTAAGTTTCCAGTTTTGAACTAGAATAGTCTTCCATGAGAGTGGAATCGCCTTTGCTCCCGGAATTGCCATAGTGACCGCTTCCCCGCGGCCATGATGTCTGATCGATGGGAATTGAACAAAGAGGATCAATTTCCGATCAACGAGAGAGCCGCTTTAATCAATGGGAGAAGAGAGCTCCAAAAGCGGCCACAAACACCGGCAAAGAGGGGCTCAAGAGCGAAGCCACAACTCGACAACGGTTTGCCACGCATAAGGCTTCAAGAAAGCAGAGAAACTTTAAGGAAAAAGGCTGACCTGCAGCTGCTGTAAATCAAAGCGCTTCCAATATTGAAACATCGATCCCGCATTGGCCGCCATCTTGAGACATATTGAGACGGAGTGagaggctgatacagagagagcgaggggctGGAGTTCAGTAGAAAGGAGGGGGAGCGCGCGCAAAACACGGAGCGGAGCAATTGAACAGGGACATCGCTTATTGAACATGGGCGTGGAATGGAGTTATTGAACATGAACCTGTGATATTGAATAGGGCCACAGAATAGAATTATTGAACGGGAGTTGGCAATTTCTTTAACAGCTAAAACATGGGATGGATTTTCCATGTAGATCGTGAACAATGCTGTAAGATTTGTTGTCGAGTGTGTGGTTTGGACTGATTTTTTTCGCTTTTCGACATGTGATTGCCAATATTGCTATTTCATATAGGCTACTATCCATTAGATTAGGCTATGCATGAGAAATGTAGTATAGCCTACTCTTGTTTTACATCTAGCCTATTATTTCTGCTCTTCTTTCTGTAGCCTAATTTCTGTGTGCTACTTGTTTATCATTGCTCAAATGCGTTTATTAATTGTTGGATTAAGATTATCATTTTATAATATTTCGTTTTACACTAATCACGTTAATAGTTTTGGTGTTGTAAACCGTTAGTTCTATTTCATGTAAATATTATCTTATTTATTGAAGTGTTTTTAAGAATAACACTGTGAAAGGTGGTTAGAACTATTTTAttgtaaattattttttattataaattCTTTACATGGACTTTATTTAGTAAATGTAGTGACTAAGATGTATAGTTTGCATTGTGAAAACATTTTAATTATTTGACTGCATGGCTGAATGTTTTATCAATACTTCAGCGGTCTCAGCAATGTGTGCTTGAATTTGAACTTGAATTTGGGAGAACAGCGCCCCTGTAGATCTGAAATGGGAATACAAGCAATCTGCTGAAATCTATAGTTTTCATGTTGTGCTGTATATACTATTCTACTTTCGATTGGAAACTTTCCATATTTGTTCTTTAAAATTCATTCACAACACCTTTTATCAGTCTTGTAGGTAGGAAAATAGCCTTACGTCTACTTAAATAATTTAATCACAACTTTGATGTTTTTGTTTATTACAGAACAAAGAAACACAtgtcaagtaactcatgcaaaaCTTTAACACATTTAAGAACTTGAATATTGCTGGATTTCAGTTAGAAatattttaaaatcaccaataAAAATCACAGTGTAATCACAGTGATTATTAAAGCAAGTATTGTTCACTGCTAAACAGTATACTATTGACAAAATTATTTATTTGCCTTGGCCTGAATGTAGTGTTATATTTTCATATATATTGTTTCCCTTATTCACACTCTGTTCCACATTGTTATGCTGATAAAGGTTATTTACGT

Function

NR:

description
PREDICTED: homeobox protein cut-like 1 isoform X7

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1215859 True 1733 lncRNA 0.37 2 37144123 37145885

Neighbor

gene id symbol gene type direction distance location
LOC100136717 LOC106568026 coding downstream 6052 37131785 ~ 37138071 (-)
LOC110537534 LOC106568022 coding downstream 104193 37019987 ~ 37039930 (-)
trnal-caa-105 NA coding downstream 207793 36936220 ~ 36936330 (-)
rab24 LOC106568018 coding downstream 222940 36914811 ~ 36921183 (-)
fgfr4 LOC106568015 coding downstream 354208 36770248 ~ 36789915 (-)
LOC110537538 NA coding upstream 300001 37445886 ~ 37448950 (-)
LOC110537540 LOC106567738 coding upstream 359321 37505206 ~ 37507238 (-)
LOC110537546 ppm1e coding upstream 457273 37603158 ~ 37667366 (-)
LOC110539142 NA coding upstream 528776 37672182 ~ 37706371 (-)
ska2 ska2 coding upstream 567542 37712908 ~ 37740454 (-)
G1067532 NA non-coding downstream 10570 37129380 ~ 37133553 (-)
G1067511 NA non-coding downstream 21908 37120403 ~ 37122215 (-)
G1067441 NA non-coding downstream 171152 36972665 ~ 36972971 (-)
G1067438 NA non-coding downstream 174802 36969090 ~ 36969321 (-)
G1067435 NA non-coding downstream 177551 36966239 ~ 36966572 (-)
G1067651 NA non-coding upstream 158747 37304632 ~ 37310152 (-)
G1067654 NA non-coding upstream 167097 37312982 ~ 37313292 (-)
G1067708 NA non-coding upstream 261443 37407328 ~ 37410162 (-)
G1067716 NA non-coding upstream 268067 37413952 ~ 37414308 (-)
G1067733 NA non-coding upstream 294170 37440055 ~ 37440337 (-)
G1067426 NA other downstream 206144 36937319 ~ 36937979 (-)
G1067390 LOC106568016 other downstream 231366 36909431 ~ 36912757 (-)
G1066163 NA other downstream 1044649 36099030 ~ 36099474 (-)
G1066054 NA other downstream 1204552 35939243 ~ 35939571 (-)
LOC110537579 LOC106603438 other upstream 1895635 39041272 ~ 39072520 (-)
G1069456 LOC106567699 other upstream 1962415 39108300 ~ 39108962 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_16032454_16034363 NA coding CI01000304 null 16031992 ~ 16034452 (-)