G1067783 (LOC106603469)


Basic Information

Item Value
gene id G1067783
gene name LOC106603469
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 37519795 ~ 37536856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1216120
GATGAATAAGACACAGATAACTGCCAAGAAGCAGAGGGAGGGATGACATCCTGGCCAAATGTGGTCACAAAAATGTGATAAGTGCCAAGTTGTTGCACTGATGAATGACACAGATGAGCTTGGTTTCAATGACAGATCAGCAACTGATCCCAGGTCTGGGTCTCCATCCACATGTTTTCAGTTTAGGTTGCTTGGTTCATTTCATGGTAGTACTGCATTCGCCAACTTGAAACATTGACACATTGTTTGCATAACATTATTAACAACCACAGAGACTGATAATTTTATACAGTCAAAAACAAACTGTATTTGAACCTTgttataaaaacaaaaaatatacacGACTTACTATTAGCACAATACATCATAGCATTACAACAAATAATGCAGTATGTATTTTAAAGCAAGATATTACTCTTGTAAACTTAATAGTAGGGCACTGGTCTAGCTGTGCATTGTTTTTCAACTTTCCCATGCCATGAGCAGCCTAGACAACATTGGCCAGCTATGGGATCTGCAAAAGACATTCACCAGCCAGGGGAGAAACTTCAATAAGGTGCCTGGAACGTTCATAAAGTCAAATtttaaatgctgaaataaataaataaaatgggaTTATTTTAACCCTAAACCATCCCTGCATTTGAATCTTAAAAGATTGAAGCCTCTATCTGtgacaggcttcataaaatcaacTAAATCCAATCAATTGACATCCATCGGTAAGAAAGTGGCAACTCTTAACACTTTTTGTCAATGACTCAACCTAGTCCTAGAATCACAGTTAAACAGAAGGAAAAGACAGTCACATTATCTAAGTCAAAACTCAAATTGTGTCAGAGACATCACATCAATAGCACAAAACAAGACTTCATCTTGATCTACCTGACCATTAATGAGCCTATACTGGATAACCCCAGCCGTCTGGACATACAGTGTTGTGTTGTTATAATTGTATTACCTTCTGGAAACTATCAAAGTAATGGATTCACGTACATTTTTGACAACAGAAATACAGGTGCTGTACAAACAGTAAATTGCACATAATCCCTCTAAAACTAGAACTTGTAGCCTATTCTatgaaaatgtaattaaaattgacatattatgacatctGAAAATCTAATACATATTCACTAAATAACTAAACAACAACATGGGGAACAAGAAAGAAAACAGAACCCACGGAGGTGACAATACTGTCACTGCAGTCCTTGATTAGAAGTAGTGTGGTTTCCTGGTTTAAACTCCATGTAAGTGTAAGTGAAACAGTTGCCCTTAAGAAAAGGCACTTAAGCTGAATTTGTTTAAATCAGTAGAAATATGTCATATAAAATTATCTATGAAACTTGTGTGACTAATCTGTCATGCTGCAAAAGAAGATTATTCAATAATTGAATGGCAAATATGTCGTAAAAATCTGCTAAATTGACAATAGCTTTTTAAGTGTAAATTACCTTTAGCAGCTAATTTCAATGTTCCATCTGCTATAGAAACCCCTTCAGAGACATACATTCTGGGGCAGTAGGGTGACCACCAGGAATTATTTTTACAAAAAGAAGATGCATAATTTTCAACTGCAAGATAAAAATTTCCAGTAAAAAAAAGCAATATCTTGGATCTCTCATGAGGCAACTGAAGTAAAATAACTTTGCCCATGCCCCTTTAACCTATTTGATTTTAAACTCTCTAGTTGACTTTGGGTCTATGACTTTCCAAAGCCTTGCTGATCACAGACCGTATAGCAAAGAACATCTACATTTACTTGTGTCTCTAACCTAGAACTTCTAAAGGTTTATGGGAGAGTAAGTGACAGAAAATACCAGCATCAGTAACAAAAATAGACATTTACTCTTCATGTAGATGAGAAATATTTCATCAGCTTGCTAAATTGCATCCAGTTAATTTGTGAAGGCTTTCTCTCGCAACCATCAAAGTGGCTAACAGAGAAACGCAAAGCGTAGAAAACATATCAGCATAAATAAGAATTAAACCAAAGAGACAGACAACACTGTAATCACAATATGAGATTAACTTGACTCTTTTCTGAAAAACTTGATGGTCCACAAGCTTAGATGAGCACAAAAACCCCCAGAGTTTAACACAATAAAACAGCCAATGAGAGCCTAGGTTAATGCTGTttataaaaaaagaaacagaaagaaaaaACATTGGTCACCACTATTCAATAAGGAAACAGAACAACAACTGTCCGACTCGCTCCTTTCTATAAACTCAGCATTTCATAGGTTTCAGTTCTTGAAAAGAGGGAATAACATTGACAACCCGATTTATCTCTCAACCTGAGGGACCAGGAAGGAGATCAGTCAGCCTATTACAACACAAGTCCACCTCACAACAAAAAACACAGCAGGGGAGAGAGTTCTGTCTTCCCCTTACTTTACCACCATGTGATCTTGAACTCGTAGATTGGCCTCTTGCAGTAGTAGTGGTTGATGAGGTGTTTGTCGCAGACGCCGATGCATTGCTGGTCGGCAGTGATGCCGCGCTCCGCCAGGTCACTGACAATGCAGTGGAGCAAGTCGTAAACATCCGCCACCGCCTCCCAGGGCCCGAACGACACGTCCACCTCACAGTGGTGTTCGAACAGTTTGGCCTCGCTCTCCGTGCGCTCAAAGCGCAGTGAGTTGAAGAGTGGCCGCTCGTACGGCGTGATGGGCATCTCCTCCTTGTACACGCAGATCTTCAGCTTGGCGAAGCGCGCCTTCCTCTGCATGGCCCGCAGCTTGGCGATCTCCACG
>TU1216121
TGAAAAACTTGATGAGCACAAAAACCCCCAGAGTTTAACACAATAAAACAGCCAATGAGAGCCTAGGTTAATGCTGTttataaaaaaagaaacagaaagaaaaaACATTGGTCACCACTATTCAATAAGGAAACAGAACAACAACTGTCCGACTCGCTCCTTTCTATAAACTCAGCATTTCATAGGTTTCAGTTCTTGAAAAGAGGGAATAACATTGACAACCCGATTTATCTCTCAACCTGAGGGACCAGGAAGGAGATCAGTCAGCCTATTACAACACAAGTCCACCTCACAACAAAAAACACAGCAGGGGAGAGAGTTCTGTCTTCCCCTTACTTTACCACCATGTGATCTTGAACTCGTAGATTGGCCTCTTGCAGTAGTAGTGGTTGATGAGGTGTTTGTCGCAGACGCCGATGCATTGCTGGTCGGCAGTGATGCCGCGCTCCGCCAGGTCACTGACAATGCAGTGGAGCAAGTCGTAAACATCCGCCACCGCCTCCCAGGGCCCGAACGACACGTCCACCTCACAGTGGTGTTCGAACAGTTTGGCCTCGCTCTCCGTGCGCTCAAAGCGCAGTGAGTTGAAGAGTGGCCGCTCGTACGGCGTGATGGGCATCTCCTCCTTGTACACGCAGATCTTCAGCTTGGCGAAGCGCGCCTTCCTCTGCATGGCCCGCAGCTTGGCGATCTCCACG

Function

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1216120 False 2762 lncRNA 0.39 2 37519795 37522584
TU1216121 True 698 lncRNA 0.50 2 37519795 37536856

Neighbor

gene id symbol gene type direction distance location
LOC110537540 LOC106567738 coding downstream 12557 37505206 ~ 37507238 (-)
LOC110537538 NA coding downstream 70845 37445886 ~ 37448950 (-)
LOC100136717 LOC106568026 coding downstream 381724 37131785 ~ 37138071 (-)
LOC110537534 LOC106568022 coding downstream 479865 37019987 ~ 37039930 (-)
trnal-caa-105 NA coding downstream 583465 36936220 ~ 36936330 (-)
LOC110537546 ppm1e coding upstream 66302 37603158 ~ 37667366 (-)
LOC110539142 NA coding upstream 137805 37672182 ~ 37706371 (-)
ska2 ska2 coding upstream 176571 37712908 ~ 37740454 (-)
LOC110539143 LOC106567739 coding upstream 241131 37777987 ~ 37790177 (-)
LOC110537549 LOC100380745 coding upstream 265740 37802596 ~ 37886734 (-)
G1067679 NA non-coding downstream 75480 37443813 ~ 37444315 (-)
G1067733 NA non-coding downstream 79458 37440055 ~ 37440337 (-)
G1067716 NA non-coding downstream 105487 37413952 ~ 37414308 (-)
G1067708 NA non-coding downstream 109633 37407328 ~ 37410162 (-)
G1067654 NA non-coding downstream 206503 37312982 ~ 37313292 (-)
G1067792 NA non-coding upstream 20904 37557760 ~ 37558393 (-)
G1067791 NA non-coding upstream 21715 37558571 ~ 37559476 (-)
G1067821 NA non-coding upstream 49433 37586289 ~ 37589330 (-)
G1067828 NA non-coding upstream 59640 37596496 ~ 37597009 (-)
G1067832 NA non-coding upstream 72502 37609358 ~ 37609590 (-)
G1067426 NA other downstream 581816 36937319 ~ 36937979 (-)
G1067390 LOC106568016 other downstream 607038 36909431 ~ 36912757 (-)
G1066163 NA other downstream 1420321 36099030 ~ 36099474 (-)
LOC110537579 LOC106603438 other upstream 1504664 39041272 ~ 39072520 (-)
G1069456 LOC106567699 other upstream 1571444 39108300 ~ 39108962 (-)
fkbp6 LOC106567715 other upstream 1799248 39336054 ~ 39343006 (-)

Expression


Co-expression Network