G1067791


Basic Information

Item Value
gene id G1067791
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 37558571 ~ 37559476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1216135
TGAATGGCAATTAATACACTGACAATAGACACTGTAAAACAAGGCTATTCTTATAAGTTACATGTCCATAATAAAAAGTGATGTGCCATTCAGTTTAAAAGTTTACATAAATATACACATACTTGTTTAGAAATCTCTTAAGAGACCCCTTAGCAGTCAGTCACAGTTGATTACAGTGTTAAAGTAGAGTACCTGTTATGTCTGTGTAACAACGGAATGAGTGATGTTAATTAACACTTTACAACCAGGGGCTTATTCAGGTGATTAAAACGTTCAATGGATTGCTGATAGCAAACACCATGCGGTAATCAGATCGAACTGTTAAGAAGTGTCCCTTCTGCATTGTTCTGAGTGTTTCGCCCCACTGAACATTCCCCAGGTATCATCCATATTTCACGATACATTATGATATACAACATGCCACCTCCATATATCAGCAGTTCACTGGCATTTTGTACATAACACAGTAACCTGCGTCTTGGTCAACTTCAGGTTTCACAGATTGTACCACTGTCTGAAGAATAAACTTAGGATGGTGCTCCCAGATCTGTTGCAAAATGGAAAAGAAGCGTATTAACTGAAAGTCCTCTATTAATCCTTTGTTTCACTAGACTGGCATCCTCTTAAATATTTTCCAACCGTTTGAATGCGATAATAAAATTAAAGGGCCACATATTTTAGCACGCTTATTGATACGTTCTCACATTTAGCTTAAGTAGTACCATTaccttaatatatatatatatatatatatatatatatatatatatatatatatatatattttacagccAGATAATTCTGCACCATCAAAATAAATTAGAAATATAGCAGGTCGATTCTAGCCCAGCGGAAGATCATcctggcaattctcacataggaacttcat
>TU1216136
TGAATGGCAATTAATACACTGACAATAGACACTGTAAAACAAGGCTATTCTTATAAGTTACATGTCCATAATAAAAAGTGATGTGCCATTCAGTTTAAAAGTTTACATAAATATACACATACTTGTTTAGAAATCTCTTAAGAGACCCCTTAGCAGTCAGTCACAGTTGATTACAGTGTTAAAGTAGAGTACCTGTTATGTCTGTGTAACAACGGAATGAGTGATGTTAATTAACACTTTACAACCAGGGGCTTATTCAGGTGATTAAAACGTTCAATGGATTGCTGATAGCAAACACCATGCGGTAATCAGATCGAACTGTTAAGAAGTGTCCCTTCTGCATTGTTCTGAGTGTTTCGCCCCACTGAACATTCCCCAGGTATCATCCATATTTCACGATACATTATGATATACAACATGCCACCTCCATATATCAGCAGTTCACTGGCATTTTGTACATAACACAGTAACCTGCGTCTTGGTCAACTTCAGGTTTCACAGATTGTACCACTGTCTGAAGAATAAACTTAGGATGGTGCTCCCAGATCTGTTGCAAAATGGAAAAGAAGCGTATTAACTGAAAGTCCTCTATTAATCCTTTGTTTCACTAGACTGGCATCCTCTTAAATATTTTCCAACCGTTTGAATGCGATAATAAAATTAAAGGGCCACATATTTTAGCACGCTTATTGATAC
>TU1216137
TCCAGGGGTTTATTCATTGAATGGCAATTAATACACTGACAATAGACACTGTAAAACAAGGCTATTCTTATAAGTTACATGTCCATAATAAAAAGTGATGTGCCATTCAGTTTAAAAGTTTACATAAATATACACATACTTGTTTAGAAATCTCTTAAGAGACCCCTTAGCAGTCAGTCACAGTTGATTACAGTGTTAAAGTAGAGTACCTGTTATGTCTGTGTAACAACGGAATGAGTGATGTTAATTAACACTTTACAACCAGGGGCTTATTCAGGTGATTAAAACGTTCAATGGATTGCTGATAGCAAACACCATGCGGTAATCAGATCGAACTGTTAAGAAGTGTCCCTTCTGCATTGTTCTGAGTGTTTCGCCCCACTGAACATTCCCCAGGTATCATCCATATTTCACGATACATTATGATATACAACATGCCACCTCCATATATCAGCAGTTCACTGGCATTTTGTACATAACACAGTAACCTGCGTCTTGGTCAACTTCAGGTTTCACAGATTGTACCACTGTCTGAAGAATAAACTTAGGATGGTGCTCCCAGATCTGTTGCAAAATGGAAAAGAAGCGTATTAACTGAAAGTCCTCTATTAATCCTTTGTTTCACTAGACTGGCATCCTCTTAAATATTTTCCAACCGTTTGAATGCGATAATAAAATTAAAGGGCCACATATTTTAGCACGCTTATTGATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1216135 False 889 lncRNA 0.35 1 37558571 37559459
TU1216136 False 696 lncRNA 0.37 1 37558764 37559459
TU1216137 True 713 lncRNA 0.37 1 37558764 37559476

Neighbor

gene id symbol gene type direction distance location
LOC110537540 LOC106567738 coding downstream 51333 37505206 ~ 37507238 (-)
LOC110537538 NA coding downstream 109621 37445886 ~ 37448950 (-)
LOC100136717 LOC106568026 coding downstream 420500 37131785 ~ 37138071 (-)
LOC110537534 LOC106568022 coding downstream 518641 37019987 ~ 37039930 (-)
trnal-caa-105 NA coding downstream 622241 36936220 ~ 36936330 (-)
LOC110537546 ppm1e coding upstream 43682 37603158 ~ 37667366 (-)
LOC110539142 NA coding upstream 115185 37672182 ~ 37706371 (-)
ska2 ska2 coding upstream 153951 37712908 ~ 37740454 (-)
LOC110539143 LOC106567739 coding upstream 218511 37777987 ~ 37790177 (-)
LOC110537549 LOC100380745 coding upstream 243120 37802596 ~ 37886734 (-)
G1067792 NA non-coding downstream 178 37557760 ~ 37558393 (-)
G1067749 NA non-coding downstream 4658 37466614 ~ 37553913 (-)
G1067783 LOC106603469 non-coding downstream 21715 37519795 ~ 37536856 (-)
G1067679 NA non-coding downstream 114256 37443813 ~ 37444315 (-)
G1067733 NA non-coding downstream 118234 37440055 ~ 37440337 (-)
G1067821 NA non-coding upstream 26813 37586289 ~ 37589330 (-)
G1067828 NA non-coding upstream 37020 37596496 ~ 37597009 (-)
G1067832 NA non-coding upstream 49882 37609358 ~ 37609590 (-)
G1067876 NA non-coding upstream 154467 37713943 ~ 37714433 (-)
G1067426 NA other downstream 620592 36937319 ~ 36937979 (-)
G1067390 LOC106568016 other downstream 645814 36909431 ~ 36912757 (-)
G1066163 NA other downstream 1459097 36099030 ~ 36099474 (-)
LOC110537579 LOC106603438 other upstream 1482044 39041272 ~ 39072520 (-)
G1069456 LOC106567699 other upstream 1548824 39108300 ~ 39108962 (-)
fkbp6 LOC106567715 other upstream 1776628 39336054 ~ 39343006 (-)

Expression


Co-expression Network