G1068141 (LOC106567677)


Basic Information

Item Value
gene id G1068141
gene name LOC106567677
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 38223513 ~ 38224468 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1216554
TGTACTTTATTGATCATCAGCAAAACGACACCAGGCCATTTCATAGAAGCCTTGCAGTTCTTAGTCGGAGGAATGGACAATGGGGTCCTTTATGACAACCCGGAGGCACTACTCCATTTGAGACATTTCCATATCATTGCTGTGCTTCACAACCATGTGACGCCCTGACAGTGTAACATTCAAAGAAAAAAACGAACAACAATGAAAACCACAACCTGTTGctccttcattcattcattaacttGCTTGCTTTCAACTACACTTACTCCATGCTTAATGGCTTCTGGTTATCTCCCTTTTTAGGTATGTTTACATTTTGTGTCATGGCTGGAGAACGTATGTGTCAGATCAATTCCACAAAGTCTTCAAAGGCCATCTTTGCGTGCATGAGTCTGGTAGCCGCTGTTTGGTTCCATGTCTAGAGACCTCCAGGGCCCATGCCTCAGCTATCGGTATAGAGGCTCAGGCTGGTGAGTGGCAGGTCTATAGAGCTGCTGTAACCGCACCGGTCTGGTTGGCCAGCCACCGGGTAATTGTCCAATGACCCGTAGGTTCACAGGGTGCCCATGTCCCGAGAACTGGGCATTTGGGCTCAGGATGTGGGTCTGGCCCGGCTGGGAGTCCAGCGGAGGTAGACTGGCGTGGGACGGGGCAGAGGGCAAGGTGGTTGGCAAGGGGAAGTGGGGCAGCAGGATGGCGGGGGTGAGGCCGTAGCGGAGCTGGAAGACCCGGGGCGGGCCCTGGGCCACGAAGCCGTTGGGCTGCTGGGTTTCAGGGTGCTCGTCTCTCTTCACCTCCCGCGCCTTGTCCTCTCGCTCCTCTAGCTTTTTGGGTTTGCTGGAATTCTCTTTGGCTCGGCTGAGCTCCTGGATTTTCTCTGCCTGAACACGGCGGATGTGGTAGCTCTTCCTGGAGCTTTGGAAGGAGTCCAGGAACCCCTCCAAGGGCACGTTCCC

Function

NR:

description
vacuolar protein sorting-associated protein 37D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1216554 True 956 lncRNA 0.54 1 38223513 38224468

Neighbor

gene id symbol gene type direction distance location
nup88 LOC106567676 coding downstream 41899 38159600 ~ 38181614 (-)
LOC110537557 NA coding downstream 119339 38096980 ~ 38104174 (-)
mis12 mis12 coding downstream 160722 38057775 ~ 38062791 (-)
mcama LOC106567672 coding downstream 188033 37970263 ~ 38035480 (-)
polr2j polr2j coding downstream 285084 37936226 ~ 37938429 (-)
LOC118937669 NA coding upstream 17640 38242108 ~ 38247683 (-)
LOC110537564 LOC106567681 coding upstream 80725 38305193 ~ 38314622 (-)
LOC110537566 LOC106567683 coding upstream 206961 38431429 ~ 38434087 (-)
LOC110537568 dyrk1a coding upstream 410078 38634546 ~ 38677873 (-)
ttc3 LOC106567687 coding upstream 494061 38718529 ~ 38752891 (-)
G1068168 NA non-coding downstream 3692 38219376 ~ 38219821 (-)
G1068166 NA non-coding downstream 5111 38218120 ~ 38218402 (-)
G1068093 NA non-coding downstream 143534 38079140 ~ 38079979 (-)
G1068092 NA non-coding downstream 148298 38074856 ~ 38075215 (-)
G1068091 NA non-coding downstream 150415 38072855 ~ 38073098 (-)
G1068184 NA non-coding upstream 26668 38251136 ~ 38251342 (-)
G1068188 NA non-coding upstream 43046 38267514 ~ 38267735 (-)
G1068189 NA non-coding upstream 43448 38267916 ~ 38268252 (-)
G1068191 NA non-coding upstream 47028 38271496 ~ 38271738 (-)
LOC110539142 NA other downstream 517142 37672182 ~ 37706371 (-)
LOC110537546 ppm1e other downstream 556259 37603158 ~ 37667366 (-)
LOC110537540 LOC106567738 other downstream 716369 37505206 ~ 37507238 (-)
LOC110537534 LOC106568022 other downstream 1192829 37019987 ~ 37039930 (-)
G1067426 NA other downstream 1285534 36937319 ~ 36937979 (-)
LOC110537579 LOC106603438 other upstream 817052 39041272 ~ 39072520 (-)
G1069456 LOC106567699 other upstream 883832 39108300 ~ 39108962 (-)
fkbp6 LOC106567715 other upstream 1111636 39336054 ~ 39343006 (-)
G1071725 NA other upstream 2814398 41038866 ~ 41039931 (-)
G1073009 NA other upstream 3821395 42045863 ~ 42062632 (-)

Expression


Co-expression Network