G1071612


Basic Information

Item Value
gene id G1071612
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 40876111 ~ 40938063 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1220278
AGACAAGaactcattttttttttgtaaaaatgtctattAATGAACCAATACAAAATGTGTATGGGAATGTGAATATCTTTTTTCTTCATTAATACACATTAACATTGCCCAAGTAGACCTACAGCAGAAAGACAAAAAATAATAAATGAAGACAATGAATTGATAAACAACCGAACGTCCTGGGAGGAAAACCAAACATGAGAGACGTGTTTAAATTGATAGTTGCACAGCCACAGCTGAgtgtattctgttcctgtgtcATTTTAACAAACTGATACATTATGAACTATGTCTATACAAAGTCATACTTAAACACATATTACACAGTTCACTGGATATTTAAGAAAATACATAAAACATGTACAGCTTaaatgcaaaaaaacaacaaaaaaaacaccagTTGTCTCTTGATCTAAAATCATTAgcgttttttttaatcaatttgtgGTGGGGCCTAGACTTTGCATTCTACCTGAGATGCAATCACACCATTCAATGCACATGAACCTgagaccagtggtgtaaagtactttagtaaaaatactttaaagtactaccaAGTCGTTTTTTGGGTATCTATCATTTACtttgttatttatatttttacttccctacattcctaaagaaaagcatgtactttttactccatacattttctctgacacccaaaagtactagttacattttgaatgcttagcaggacaggaagatggtccaattcacgcacttatcaagagaacatccctggcatccctactgcctctgatctgacggacttactaaacacaaatgcttcgtttgtaaattatgtgttggagtatgcccctggctatcagcaaacaaaaaaaacaagaaaattgttcTGCCTGAATTTTAGGAATTTG
>TU1220277
AGACAAGaactcattttttttttgtaaaaatgtctattAATGAACCAATACAAAATGTGTATGGGAATGTGAATATCTTTTTTCTTCATTAATACACATTAACATTGCCCAAGTAGACCTACAGCAGAAAGACAAAAAATAATAAATGAAGACAATGAATTGATAAACAACCGAACGTCCTGGGAGGAAAACCAAACATGAGAGACGTGTTTAAATTGATAGTTGCACAGCCACAGCTGAgtgtattctgttcctgtgtcATTTTAACAAACTGATACATTATGAACTATGTCTATACAAAGTCATACTTAAACACATATTACACAGTTCACTGGATATTTAAGAAAATACATAAAACATGTACAGCTTaaatgcaaaaaaacaacaaaaaaaacaccagTTGTCTCTTGATCTAAAATCATTAgcgttttttttaatcaatttgtgGTGGGGCCTAGACTTTGCATTCTACCTGAGATGCAATCACACCATTCAATGCACATGAACCTgagaccagtggtgtaaagtactttagtaaaaatactttaaagtactaccaAGTCGTTTTTTGGGTATCTATCATTTACtttgttatttatatttttacttccctacattcctaaagaaaagcatgtactttttactccatacattttctctgacacccaaaagtactagttacattttgaatgcttagcaggacaggaagatggtccaattcacgcacttatcaagagaacatccctggcatccctactgcctctgatctgacggacttactaaacacaaatgcttcgtttgtaaattatgtgttggagtatgcccctggctatcagcaaacaaaaaaaacaagaaaattgttcTGCCTGGTTTACTTaatttaaggaatttgaaatgatttatacttttacttttgattcttaatatagttaaaaccaaatacttttagacttttactcaagtagtattttactggcttttcactttcacttttacttgactCATTTTCTAATATGGTATCTTTGATTTGactaaagtatgacaattgggtactttttccaccaccgcCTGAGACAGGAATTAACAAAAGAATGTAAAAAgtaatttgataaaataacacGGTCAGACTACCAAGTTAACAGTACCTTGAGTCACAAAGGGGCATTTCATGAGAAAAATAAAACAGATAACACCTAGGAAAAAGAAGTGACAAAAAACATTCTATACCTTTCTGGACTTTTCACATCCATCCAAATAGTTGTCCATCATTGAattatatttcagtcttcatATCACCGGTGTTAAGTAGGTGCTCATACAAATTAACATTTATTTCATGTCAACTATGCTCGAGATGCATACTTTCCACAATATACTCCTGTTTCCTATTGGTTCTGAAAGTGGTCCCCATTCCAAACCACAACACACATAAGTAAAAGGTTAAAAAGCATAAACAAACATATATATCGACCCAGTCCACACAGCGGTGAGTACATTTAATAAAATCTCCACCTACAGAGAGAGTGAATAGATGTGTTCACTTGGTAAGAACATACTTTTTTAGGTCCAGTTTTGAATGGAAGCCACCACACTTTTTACCGAAGCAAAATAATGCTCAATGTTAAATACAAGTCACACAACCTCAATCTAAACGATGGTAACATTCTCTCTGTTGTTTGTTCCGTTTAAACAACAGAGGGAATCCAAAATGTTTCATATGATGTCACAGTCTAAAATGAAGCATTTAAACGAGTCAGGAAGCCACCGCTGTCCTGATAAACAAACAGCATTGTCGTCGTGGTACAGTGTTAAATCAGTGATAGCTCCTTTTCCAATATATCATATTTGGAATATATGTCAAATCAAACATGAAAGCAACTTCACCTCTTCAAACTCATTGTCATATCAACCACCTCAGCAGGACAGTAACTACATTGAACAGCAATGCTGACTGTGGTGATGTAGAAATGAAATGAAAAGTAATAGATAACAAAAAATGACTTTTGGCATTCCCCAATTCTCCCCCACTGGCCCTTTCAACATGGTCTCATCTTAAAGCTTAGGCAGGTCATTCacaaagaaagaaaagagaaatggTGCACACATACATGCAATGTGGTGTTGACTGACTGTTTTGGCAAGTGAAAATTGTTGCATCATGACAAGACCATGTACAGTCCAGAGGCTAGAAGTGTGATGGTAGTGGCATAAGGCCGTCTCCAGTGGTAATTCCTAGTGACACACACGCTCCTCAACTGTTATCACCCATTCAGGAGTGTTGTACAGTATGAAGTGACAAAACCCACAACAAACAGCTTGTGATAATCATAAAAACCACAAAATGATTCTGTCATGAAATTCCACTGGGATGTAAAAAATATTTCCTGGCACGTGTTTATGTATAATACATTGGTGTAAATGTATTGGCTGGACATAGTTTGTATATTGTTGGAACTACTGAACTTGTCTTGAAATCATATCCCTTGTAAAAATGTCTTAGATACAATGATTGTATGTTCTTTGCTCAGAAGCTATGTATCCCCTATTTTTCACCATCTCCTTCAAAATCCTATACCCCTTTTACAGCTCTAGTTCTAATTTTACACACAAAGCTGGAAAAATACAACTAAATGTGTGATTTACCTGTTCAGTATATACCAACATGAAGGTAGTATCACTTTATTAATGCAGTAAGTACCTCACAACCTAGATTGATATCTCTCTTATAATGAGAATATTCATCTTTGATAATCAACATTATAGTTTGGAGATGTCTTCCGGTCATTTCGCATCGAAATGAATCCTATCCGTGTTACATAGTTTGTTTTTCCCCCTAACTATATTACAGCTTGGCTAAACTGAGGCATCTTGATTTAGAGACAAAGGGTGAGTACAACACCAAGGAAATcattaaaaacaaattatttttgTCAGATTCAAAAATCTGAATGAGAGAGGATGTAAAACCCCAAAATGTCAtcacaaaaacagaaataaatgccTGCCGGGGGATTGCGGTTCCATTCAGTGGAACAGAACAAAAACATCATTGTACAGAGAATAAAAGGTGAAAATAATGAATTGAAAATGCCTCTAAGTTCAGCATAGCGAGGGTGAAATAATGTGCCTTCTACTTTCCTTATTCCAAATTGTGGCAATCTTTTAAATGCACTGGCATATCTAATTTGAAAAACAAAttgaagagacagaggaaggaaTACAAGTGATCCACGGTGATGAGGAATTGGCCCCGATACAAAGAAAACAAGGACAGTTTTCGAGACCAATTGTCCTCTACTGTCTTCCTTTAGattatatttctgtgtgtttgtgttttgaagaggggggagggggcacAATGTTATTTATGGGTAATAATATTTTTCTTATATTCATTTTTCGAATATGATACGTAAAGCGTTGGATGTGTTTTGGAGCTTTCAAAAGGTTTTGAAAAAAAGAAAGGTGGTGGTTGAGACCTGGCCTGCTCACAGTATAGTGGAAATAGGGTTCTTATGAGCTTTTGGTATGCAGGAGAGTACGTGTGTGCGAACACAgtgggagagatgaacagagccGCTGTGTAATTTTACCCTCATAGGAAAGCCAACAGCACAATGATAAtgaagagagtggaagagggaggGTGGGGAGCAACAGGGCATGTTGATGGGGGGGAAATAAAGAATGAATAGAAAATAAATTCAGAACAAGGCACAGAATTTTCTGCAAATGGTTGAACTAAACAAAATTCGTACCAGCAGTTTTGGGAGGTGTCGCATGGTGACGCTCTCTTCTACAGTGATTTCTGGCAACCCCTGAACCCCCCACCCTTACCAAAAACCTCCCCTCCCCATATTTtcaccttatacacacaaaacCTTTCCTCCTCAGCTGCAGAGACTGGACAATACATTGTTCAATCCCGGGCAATCACCCCTAAAACCAACCTACCACTCCTTCTTCTCGTCCGAGTTGTTGTGGCCCCCCTCTGCGTTGATAATGGCTGTGTCTGCATCTGCTGCATCGTCGGCTCCTTTAGCTTCATGCGTGAAGTAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1220278 False 884 lncRNA 0.34 2 40876111 40938063
TU1220277 True 4060 lncRNA 0.37 2 40933890 40938063

Neighbor

gene id symbol gene type direction distance location
ncam1a LOC106567728 coding downstream 832622 39727774 ~ 40043489 (-)
LOC118937672 NA coding downstream 896580 39973042 ~ 39979531 (-)
LOC110537608 LOC106567727 coding downstream 1185779 39568361 ~ 39690332 (-)
LOC110537607 LOC100194713 coding downstream 1330078 39518597 ~ 39546033 (-)
LOC110537606 LOC106567723 coding downstream 1367969 39505923 ~ 39508142 (-)
sc5d sc5d coding upstream 155119 41093182 ~ 41101891 (-)
LOC118937914 NA coding upstream 156519 41094582 ~ 41094719 (-)
arhgap32b arhgap32 coding upstream 192093 41130156 ~ 41364010 (-)
igsf9bb LOC106567733 coding upstream 438227 41376290 ~ 41566655 (-)
LOC118937883 NA coding upstream 800658 41738721 ~ 41740327 (-)
G1071425 NA non-coding downstream 201588 40618538 ~ 40674523 (-)
G1070703 NA non-coding downstream 429347 40446379 ~ 40446764 (-)
G1070687 NA non-coding downstream 437461 40438424 ~ 40438650 (-)
G1070672 NA non-coding downstream 445006 40430827 ~ 40431105 (-)
G1070655 NA non-coding downstream 461609 40413207 ~ 40414502 (-)
G1071656 NA non-coding upstream 3467 40941530 ~ 40941762 (-)
G1071664 NA non-coding upstream 13758 40951821 ~ 40952094 (-)
G1071665 NA non-coding upstream 14080 40952143 ~ 40952468 (-)
G1071666 NA non-coding upstream 15746 40953809 ~ 40954090 (-)
G1071707 NA non-coding upstream 76518 41014581 ~ 41014886 (-)
fkbp6 LOC106567715 other downstream 1538137 39336054 ~ 39343006 (-)
G1069456 LOC106567699 other downstream 1767149 39108300 ~ 39108962 (-)
LOC110537579 LOC106603438 other downstream 1803639 39041272 ~ 39072520 (-)
LOC110539142 NA other downstream 3169740 37672182 ~ 37706371 (-)
LOC110537546 ppm1e other downstream 3208857 37603158 ~ 37667366 (-)
G1071725 NA other upstream 100803 41038866 ~ 41039931 (-)
G1073009 NA other upstream 1107800 42045863 ~ 42062632 (-)
G1074731 NA other upstream 1765940 42704003 ~ 42713923 (-)
G1075335 NA other upstream 2625722 43563785 ~ 43564240 (-)
G1075399 NA other upstream 2722496 43660559 ~ 43660837 (-)

Expression


Co-expression Network