G1072497 (LOC107751387)


Basic Information

Item Value
gene id G1072497
gene name LOC107751387
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 41785132 ~ 41791261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1221202
cccttttgctgctataacagcctccactctgctgggaaggctttccactagatgttggaacattgctacggttacttgcttccattcagacacaagagcattagtgaggtcgggcactgatgttgggcgattacaCCTGgatcgcagtcggtgttccaatttatcccaaaggtgtttgatggggatgaggtcagggctctgcacaggtcagtcaagttcttccatatcaatctcgacaaaccatttctgtatctGTATTGTATTCTGtattgtgcacaggggcattgtcatgctgaaacaggaaagggccttccccaaactgttgccacaaaattggaaggacagaatcgtctacaatgtcattgaatgctgtagcattaagacttcccttcactggaactaaggggccctgcccgaaccatgaaaaacagccacagaccattattctgtctccaccaaactttacagttgacattatgctttggggcaggtagcgttcttctggtatctgccaaatccagattcgtccgacggactgccagatgttgaagcATGACTCATCaatccagagaacgtgtttccactgcaccagagtccaatggcagtgagatttacaccactccagccaacgcttggcattgcgcatgttaattttaggtttgtgtgcggctgctcggccatggaaacccatttcttgaagctcccggcaaacagttattgtgctgacgttgcttccagaggtagtttggaactcagtaatgagtgttgcaatcgaggacagacgTTAATTACGTGCTACACGCttcagtggtcccgttctgtgagcttgtgtggcctaccacttcgcggctgaaccactgttgctcctagatgtttccacttcacaataacagcacttacagttgaccagggcagttcTAGCAGAGCAAAAatgtgacttgttggaaaggtggcatcctgtgacagtgccacattgaaagtcactcagctcttcagtaaagccattctactgccaatgtttgtctatggagattgcatggctgtgtgctcgatttgtcagcaacaggtgtggctgaactagtcgaatccactaatttgaaggggtgtccatgtACTTTTGAATATATAGAGTATAGTCTTGCAATACTTTTCGCCTTGGCTTTTTTAACCACTGTTATTTTATTGGGCTTTAATGTATTCtactttcatattttttttttactgtctaAATAAGCTAGGAATATACatacagtcccttcagaaagtattcatatcccttgacttattccacattttgttgtgttacagcctgaattcaaaatgtattaaatatatgttctctcacccatctacacacaatacaccataatgaaaatatgtttttagaaatgtattgaaaattattgaaaattaaatatggAAATAtccaatttacataagtattcacacacctgaaTCAATACATATTAGGATtacctttagcagtgattacatctgtgagtctttccggggaagtctctaagagatttgcACACATGGATTGTACCATAGTTGCACATTTATTATTTAAATcattctttaagctctgtcaagttgattgttgatcattgctagacagccattttcaaatcttgccatagattttcaagccaatttatgtcaaaactgtaactaggccactcagtaaCAGTCAATGTTCTCTTGGTAAGCAtatccagtgtagatttggcattgtgtttttggttattgtcctgctgaaaggtgaattttctgtcagtgtctgttggaaagcagactgaaccaggttttcctctaggattttgcctatgcttagctctattctgtttctttttagcCCCCCTCAAAAATgaagatgacaagcatacccttaacatgaagcagccaccaccatgcttgaaaatattaagAATGGTACTCAGGACATAAATGCTTTGTACTCAGGACATAAATGTAATTTCTTTGCaatattttttgcagttttactttagtgcttttgttgcaaacaggatgcatgttttggaatatttgtattctgtacaggcttccttcttttcactctgtcttttaggttagtattgaggagtaactacaatgttattgatccatcctcagttttctcctatcacagccattaaactctataactgttttaaagtcaccattggcctcatggtgaaatccctgagtggtttccttcctctctggcaactgagttaggaaggccgcctgtatctttgcagtgactgggtgtattgttacaccatacaaagtgtaattaataacttcaccatgctcaaagggatattcaatgtctgcttttagttttttctaccaatgggtgcccttctttgcgaggcattggaaaacctccctggtctttgtggttaaatctgtgtttgaaattcactgctcagctgagagaccttacatatatttgtatgtgtggggtacagagatgaggttatcattcaaaaatcatgttaaacagtaTTATTGCACACAAAGCGAGTCCATGAAacgtatgtgacttgttaagcagatttttactcctgaacttctttaggcttgccataacaaagggattgaatacttattgacccaAGACATTTAAGTGtttcattttttatacatttataaGAGTTTGttaaaaacattattccacttgaacattatgggatattgtgtgaaggccaggctgtaacacaacaaaatgtggaaaaagtccaggggtgtcagtactttctgaaggcactgtaactggaAGTACTACCAAGTTGTTTGTATAACAGAAAGTACGTGTCTTTAGTCACCTGATCAGCAGTGATAAGAGGCTCCTCACTCAGGCAATTGGCATTGTCGTTCTTCTcgttcatctcctcctcctctttttcaTGAATCTCCTGATCGGAGAGGTTGCCGTTGAATCCCTCTGAGTTGGGGTCGTCCCAGctggagacagaggaagggacGTAGTTATCCGTCAGCGCATCCCACACACTGAAACAtggacaacacaaacacacattcagtCACTGCAACACAACAGAAGTACACAGTAAaaatgcaacaaacaaaaaagaaACAGATGCAAACACACAACCACCAACATTGTAACAGGTCATCTCATACACTGCAACACAAGACAAACACACAACCACCAACATTGTAACAGGTCATCTCATACACTGCAACACAAGACAAACACACAACCACCAACATTGTAACAGGTCATTTCATACACTGCAACACAAGACAAACACACAACCACCAACATTGTAACAGGTCATCGCATACACTGCAacacaagacaaacacacagccAACGACGCTGGAATGATCAGGACATTCACAACAAAGCACAATACACTATCAGTCCTCAAGGCTGCAACTATCTGGAAATAGGCTTTTTGTTTGGCACAGAAGCCTAATCCCAAATCCAGTGCCGGTTTGTGATTTAAAGAATTGAGGAGGAGGATGGATTACATAAGAGGAccatctttctcttcctctctagaTGACCCTCCTCTACCCAAATCATATTTGATAGAAATTATCAATTGTAAATCTGCAGCCATTTCCTTCTATTAGTGTTCCGTTGACCATTTGCAGACAGTGAATTCAGAGGAGGAGATGTTCACATGACATAATTGTGCTTTGTTCCCAATTCTGTCCCTCAACTTGCCAACATAATAAATAACATCAAAATGCACATCATAATCCTCCGTATTGCACTCCAGGCTGCAATGCACACTGTCCACTAACAATTAAAGAAAAGCCCACAGTTTACACATTTTTTAAAGGTGTCCAATGTGAAGAAGTATAGATAAAAACAGCCCCTTACAGCATTGTACAGGTCCTCCTCGAACTATAAGCACCTCAGTCCAATCAAGGCTGCAGCCTTGTGAAAATGACCAGAGTAGAACTCTCCCTTTGTTTCCGCTTTCTTTGTTTTCCATCCAGCTTGGCATGGCACCCACACCCTACCCTCCTCTCAGTGGCACTGCCCAGCCATGCGCCAAACAGGAAACAAGCAGCCATTCATCGGGACTCATGACCTCACAGGTCATGCCTGTTGTGttgtccacaacacacacacatacacacctctcCATCTGCCAAACAGGAACTAACTGGTACAGCACCGTCCCATATacattgctcaaaaaaataaagggaacacttaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccacccaggaagcaacactgattgacaaaaaatgtcacatgctgttgtgcaaatggaatagacaacaggtggaaattataggcaattagcaagacacccccaataaaggagtggttctgcaggtgagaaccacagaccacttctcagttcctatgcttcctggctgatgttttggtcacttttgaatgctggcggtgctttcactctagtggtagcatgagacggagtctacaaccaacacaagtggctcaggtagtgcagctcatccaggatggcacatcaatgcgagctgtggcaagaaggtttgctgtgtctgtcagcgtagtgtccagagcatggaggcgctaccaggagacaggccagtacatcaggagacgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1221202 True 4633 lncRNA 0.42 4 41785132 41791261

Neighbor

gene id symbol gene type direction distance location
LOC118937883 NA coding downstream 44805 41738721 ~ 41740327 (-)
igsf9bb LOC106567733 coding downstream 218477 41376290 ~ 41566655 (-)
arhgap32b arhgap32 coding downstream 421122 41130156 ~ 41364010 (-)
sc5d sc5d coding downstream 683241 41093182 ~ 41101891 (-)
esama LOC106567655 coding upstream 13815 41805076 ~ 41877145 (-)
LOC110537621 msantd2 coding upstream 93478 41884739 ~ 41891363 (-)
LOC110537624 robo4 coding upstream 433910 42225171 ~ 42253779 (-)
tmem218 tmem218 coding upstream 467389 42258650 ~ 42265787 (-)
LOC110538899 LOC106567646 coding upstream 1166176 42957437 ~ 43517782 (-)
G1072519 NA non-coding downstream 15215 41769695 ~ 41769917 (-)
G1072500 NA non-coding downstream 51079 41733850 ~ 41734053 (-)
G1072499 NA non-coding downstream 51532 41733325 ~ 41733600 (-)
G1072378 NA non-coding downstream 217223 41567494 ~ 41567909 (-)
G1072369 NA non-coding downstream 227514 41557314 ~ 41557618 (-)
G1072538 NA non-coding upstream 11976 41803237 ~ 41803457 (-)
G1073025 NA non-coding upstream 287638 42078899 ~ 42079144 (-)
G1073081 NA non-coding upstream 375639 42166900 ~ 42192399 (-)
G1073256 NA non-coding upstream 615888 42407149 ~ 42407395 (-)
G1071725 NA other downstream 745201 41038866 ~ 41039931 (-)
fkbp6 LOC106567715 other downstream 2447158 39336054 ~ 39343006 (-)
G1069456 LOC106567699 other downstream 2676170 39108300 ~ 39108962 (-)
LOC110537579 LOC106603438 other downstream 2712660 39041272 ~ 39072520 (-)
LOC110539142 NA other downstream 4078761 37672182 ~ 37706371 (-)
G1073009 NA other upstream 254602 42045863 ~ 42062632 (-)
G1074731 NA other upstream 912742 42704003 ~ 42713923 (-)
G1075335 NA other upstream 1772524 43563785 ~ 43564240 (-)
G1075399 NA other upstream 1869298 43660559 ~ 43660837 (-)
G1075509 NA other upstream 1982803 43774064 ~ 43774425 (-)

Expression


Co-expression Network