G1076549


Basic Information

Item Value
gene id G1076549
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 44602316 ~ 44603294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1225518
agggggccgaatactttcgcaaggcactgtatgtatcaaATACACGCCCCTACTTAtatatttggacagtgaagttaAAAAAGTTTAATTTGTCTCTatgctccagcattttggatttcagatcaaatgttttatatgaggcACAGaatgtacagaatgtcaccttttatttgagggtattttcatatatatctgtTTTATAGTTTAGAAATGAATGCACTTTATGTATCgcatttgaaggtgtcataagtatttgaACCAAGTGCATTAAATGTAGTtcaaagtttagtatttggtcacatattcctagcatgcaatgactaaatcaagcttgtgactctacaaacttgttggaagCATTTGCATTTGGTTTTGGTTGTTTCggattatgttgtgcccaatagaaatgtatAGTAAATAATGCATTGGGTGATTTTGTAGTcaattttattgtaaataagaatagaatatgtttctgaacaactTCAAATGGGGACTATATACATAAAAGGCTTTCATTTCTACGGTAAAACAAATATGTaagaaaataccctcaaataaaaggtgacattttgTACTATAGCCATTGTATCTCATATCCAAAATGCTGAGAGAGCCGAATTAAAAGGTTTAGCTTCattgtccaaataaatacataggGGAATACATGTATAATTTATTAGACATCAGTTGTAGCCTACACACTTGTCAATCAATCTATGTTGATGTAGTTTTTCTCCAAAACAATATTCACATGATGGTGAACTTCAGAGAAGCAGAAGCAAACCATACcactagagggagacagagcacaTGAAACCAACATCTAAtggtttgctcctagcagaatTTTGCTAGCCTATGCGAATGTCTGTGCCTCGCATACTCCCCTAAAAGACCTTCACTTGAAATATTAGAAACAAGCGGCAATATTTACAAATATTTTAAAACTGAATTCAAAAGCCTATTAAACTCTGCT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1225518 True 979 lncRNA 0.34 1 44602316 44603294

Neighbor

gene id symbol gene type direction distance location
LOC110537661 LOC101073377 coding downstream 1167 44546519 ~ 44601149 (-)
LOC118937885 NA coding downstream 33176 44564224 ~ 44569140 (-)
nova1 LOC106567594 coding downstream 83094 44479843 ~ 44519222 (-)
alkbh6 alkbh6 coding downstream 128857 44456976 ~ 44473459 (-)
LOC110537656 capns1 coding downstream 163038 44430070 ~ 44439278 (-)
plekhb1 plekhb1 coding upstream 3868 44607162 ~ 44610310 (-)
LOC110537668 LOC106603713 coding upstream 280499 44883793 ~ 44965601 (-)
LOC110537669 LOC106567584 coding upstream 368704 44971998 ~ 45021139 (-)
LOC118937886 NA coding upstream 419530 45022824 ~ 45026146 (-)
LOC110537671 LOC106567583 coding upstream 426795 45030089 ~ 45072800 (-)
G1076534 NA non-coding downstream 17774 44583390 ~ 44584542 (-)
G1076519 NA non-coding downstream 48033 44552944 ~ 44554283 (-)
G1076464 NA non-coding downstream 124157 44477370 ~ 44478159 (-)
G1076465 NA non-coding downstream 125071 44476294 ~ 44477245 (-)
G1076475 NA non-coding downstream 129126 44472842 ~ 44473190 (-)
G1076588 NA non-coding upstream 89568 44692862 ~ 44697846 (-)
G1076610 NA non-coding upstream 100935 44704229 ~ 44733447 (-)
G1076648 LOC106567588 non-coding upstream 157548 44760842 ~ 44767448 (-)
G1076674 NA non-coding upstream 212178 44815472 ~ 44820392 (-)
G1076713 NA non-coding upstream 276144 44879438 ~ 44882247 (-)
G1076460 NA other downstream 147046 44454648 ~ 44455270 (-)
G1075509 NA other downstream 827891 43774064 ~ 43774425 (-)
G1075399 NA other downstream 941479 43660559 ~ 43660837 (-)
G1075335 NA other downstream 1038076 43563785 ~ 43564240 (-)
gria4b LOC106567580 other upstream 530558 45133844 ~ 45296904 (-)
G1078323 LOC106567565 other upstream 1599310 46202604 ~ 46206088 (-)
G1078783 NA other upstream 2213149 46816443 ~ 46817065 (-)
LOC110537706 LOC106567549 other upstream 3311257 47911648 ~ 47942039 (-)
G1081055 NA other upstream 3815127 48418421 ~ 48418884 (-)

Expression


Co-expression Network