G1077960


Basic Information

Item Value
gene id G1077960
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 45511065 ~ 45514278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1227073
taggtgtcaacttctgactggtactgtatatatatatcattacatGCTAAATATTatgttaaatgttttgttttttcgtTGCCCTGTGTGTGAACAAACCCTCACGCTTTGTTTGGTCACTGTTATGCGTCTATCTGAAACACTATGATGACTGTCTGGGGAGGAAGTGGAGACATTCCTTAGGACTGTCAGGTATCGGGCCTTCGTCCAGTCCGCCTCATTGTTTTGAGAAATGGTCATATAAGGAGGAGGGTATACAGTGGCCAGACAATGACAGAAAAATGTAAATATACCAACACCGCCCTCTCTCCTCTTACTTTGATTTGCCaagtcccctcctctcccatcctgtcagtctcctccacctgtctcatTCATTTGTTACATGGTCTGATCCATTTCCTCCCGGACCTCCCCTATGCTAAAGACACTAGAGGCACCTACAGATTACAGTGATGTTTTAGTGTACATAAAGGCCTTTTGGCAGATGGAACCTGTTAACGTCACATTTGAAATGATGCAGACTTAGTTCCCAGCACTGTGATGCATAAGTTCACATTGTCACACTCGACAGAAAGCCGCAGCCTTAATCCTTTGGTGTCTCCCCTAGTTTCCCTCCCACGTGGTCGTAGCAAACACAGTAAATATACATACACGTTTTTAAGTTGACTGTATTCATTGTTTCTGTCAGCTACGTTTCAACTGGGAGCTCTAAGTTAGGTCTGGGTTGTATTCAGTAGGGCACCATGTTGAAAGTTTTAAAAAAAGTTATGCAACAGAAAACGATATTGAATGTTTCTTATCGGACAAGTTTGGGTAGTACCTCCCCTTTTCAAAACCTTTCCTCCCGACTGAACATGACCAAGTTAATTTCCCTAGTGTCTCCCTTAGTGCCAATCTATCATCCTCTCACCCAGTACCTACCCTCTGGGCACAGTTATGACACATCCAGCCACTGACGTGCCAGATACACCGCAGTATGCTAAACGTCCTCATCAGATGATTACACTACATTGCTAAAGGACTGTGTGGGTGAAAGGCACATCGATCATAGTAACATGGGTAGGTATATTGACCAATCGTAGGCACATGTGAGTGTTTTAGGCCAATCATCGTCATTTGGGGAGGGTCTGTTTATTTTGTCCTTTCTACCTCGTCTGAATTGTTTTAATTGATGTTAATTGTCTTTCCGAAATAGGAAAATAACATGACCTGAAGTGCCATGTATTTTTGTGGAAATGTTGGTAGATTTTATTTCCTTATTTTTTGGGGTTGTTTTTTTTTGCCAACCGAACAATTATAGTCCAAACACTCCTTACTCCCTCAACTATACCCTGTGGTATTATTGTGTAAATGTGCATAGTTGCTCAACTTTCCCAACAGTGTAAGAACCTACGTTCCTTCCAAGTCCATGTCTATGAAGCTGCAAGACTTTTTAATAATGCTAAGAGTGAGAATATTAATTAAAAGCCCTGTGCAGATGTTTTCTATGTTAAAGTTCACAAAGACACTACCGTTTGCTCTATTGAAGGCAGCACTGAGGGCAATCTGCATAACTTATGTTGGCTGCAGAATCATTGTATTTACGAGACAATGAACAGTTAAAATGTGTCTGTAAAAGTTTGAATGGTTTTATGCTCTGTATGTGATATAAACAGAGTTCAGTGACAGGAGGAGTAGTAAGGCAAGAGGATGATTGAACTATGACACAACGcaccagggttgtgttcagtagggtacaaagtagcaaaatgttttgcgaAGGGGGTAAAACAAATAGTTCTTACTGGTCAAGTTCAGGTAGTAGGCTACCTCCCAGTTTCACTGTTTTgttttctccctactgaaccAGACCACAACCAGACTCGTGTTGCCCGGGTTAAATAATATTTCTATATGTTTTAATGAATTAGAAATTATGCAATCTGTATTTagcaatgacagagagagatttaCACAAATGAATGACAAACTGAAAATATGACATTAAACTGCCTGACCGAGTTCTCCTATTGCATAACTTTGAATTATTTGTTTAAGTCAATACTGCAGACTGGGAAGGGTGCTGTGGACATGTACCTGGCACCTCTCATTTTCCCTTTCTAGTTTTCTTGAACTCTGTTGTCAATACTGTTTGGATTTCTTGAAAGGAAACAAATAATTGATGTGCTTTCTGTTGGTCTTTGGCTTTTTAATGTTGTCCTCTGGTATGGCACTGATGGGCTTGCCTTGAAGAGACTGTCTCCATTTCATAGAGGGCCATGATCATATGATACCGTTTTGTCTAGTGGAGTATAGGCCAGCAACTTTCGCCCTTGGACCAACGAATACTTGGATTTTAATGAGTGATTTTAAAATGGTGTCCTTTCACAAACATTTTTCAACGTTTAATCCCTTTTCTGCACCTTATCTCTTATATTGCCTCTGTTACTGATGATTGTTTTTTTATGCCTCATCATCATTCATGCCAAACTGTTTTCATTCTCCTGTATTTTTGTAGGTAATTCCATTACATGAAATTGCCCTATCCCAATTACAATTTTCCTTTCGTGCCATCCCTTTTCTTTTGAAGAGGACAGGAGTGGGTGAAAATATTGATAATTGATTTTAAGATGTTCCATTGTGATATAACACTATTATTTGAAGTTCACATTTTACCTTTTAGTTTCTGTAGCATGTAATGTGTTAATATCCTTAGTAAATAAAAACCTATTACAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1227073 True 2720 lncRNA 0.39 3 45511065 45514278

Neighbor

gene id symbol gene type direction distance location
LOC110537675 LOC106567579 coding downstream 6189 45466504 ~ 45504876 (-)
gria4b LOC106567580 coding downstream 214161 45133844 ~ 45296904 (-)
LOC110537671 LOC106567583 coding downstream 438265 45030089 ~ 45072800 (-)
LOC118937886 NA coding downstream 484919 45022824 ~ 45026146 (-)
LOC110537669 LOC106567584 coding downstream 489926 44971998 ~ 45021139 (-)
LOC110537676 LOC106567578 coding upstream 1083 45515361 ~ 45527757 (-)
LOC110537678 LOC106567577 coding upstream 43798 45558076 ~ 45573323 (-)
LOC110537679 LOC106567575 coding upstream 76483 45590761 ~ 45644071 (-)
LOC110537682 LOC106567574 coding upstream 163100 45677378 ~ 45726321 (-)
LOC110538902 LOC106567602 coding upstream 218474 45732752 ~ 45815120 (-)
G1077966 NA non-coding downstream 40863 45469627 ~ 45470202 (-)
G1077959 NA non-coding downstream 48944 45461824 ~ 45462121 (-)
G1077078 NA non-coding downstream 112735 45398006 ~ 45398330 (-)
G1077076 LOC106607612 non-coding downstream 113303 45397545 ~ 45397762 (-)
G1078036 NA non-coding upstream 80579 45594857 ~ 45595153 (-)
G1078026 NA non-coding upstream 85902 45600180 ~ 45604384 (-)
G1078039 NA non-coding upstream 87703 45601981 ~ 45612597 (-)
G1078040 NA non-coding upstream 91908 45606186 ~ 45613373 (-)
G1078072 NA non-coding upstream 183105 45697383 ~ 45697605 (-)
LOC110537661 LOC101073377 other downstream 910177 44546519 ~ 44601149 (-)
G1076460 NA other downstream 1055795 44454648 ~ 44455270 (-)
G1075509 NA other downstream 1736640 43774064 ~ 43774425 (-)
G1075399 NA other downstream 1850228 43660559 ~ 43660837 (-)
G1078323 LOC106567565 other upstream 688326 46202604 ~ 46206088 (-)
G1078783 NA other upstream 1302165 46816443 ~ 46817065 (-)
LOC110537706 LOC106567549 other upstream 2400273 47911648 ~ 47942039 (-)
G1081055 NA other upstream 2904143 48418421 ~ 48418884 (-)
G1081571 NA other upstream 3387130 48901408 ~ 48905274 (-)

Expression


Co-expression Network