G1078039


Basic Information

Item Value
gene id G1078039
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 45601981 ~ 45612597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1227155
ctgtgtgtgtgtctgtctcggtgtctgtgtctgtctgtctcggtgtctgtctgtctgtctcggtttctgtctgtctgtctcggtgtctgtctgtctgtctcggtgtctgtctgtctgtctcggtgtctgtctgtctcggtgtctgtctgtctgtcttggtgtctgtctgtctgtgtgtctcggtctctgtctcggtgtctgtgtgtctgcgtgtgtgtgtgtctcggtgtctgtgtgtgtctgcctcggtgtctgtgtgtgtgtctgcctcggtgtctgtgtgtgtgtctgcctcggtgtctgtgtgtgtctctgcctctgtgtctgtgtgtgtctgcctcggtgtctgtgtgtctctgtctcggtgtctgtgtgtctctgtctcggtgtctgtgtgtctctgtctcggtgtctg
>TU1227158
tgtgtgtgtctgcctcggtgtctgtgtgtgtgtgtgtctgtctcggtgtctgtgtgtgtctgtctcggtgtctgtctcggtgtctgtctcggtgtctgtctcggtgtctgtctcggtgtctgtgtgtgtgtctgtctcggtgtctgtgtgtgtgtctgtctcggtgtctgtgtgtgtgtctgtctcggtgtctgtgtgtgtgtctgtctcggtgtctgtctcggtgtctgtgtctgtctcggtgtctgtgtctgtctcggtgtctgtgtctgtctcggtgtctgtctgtctgtctcggtgtctgtgcatgtctctgtctcggtgtctgtgtgtctctgtctcggtgtctgtgtgtgtgtctgcctcggtgtctgtgtgtgtgtctacctcggtgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1227155 False 415 lncRNA 0.55 2 45601981 45608588
TU1227158 True 396 lncRNA 0.56 2 45609952 45612597

Neighbor

gene id symbol gene type direction distance location
LOC110537678 LOC106567577 coding downstream 28658 45558076 ~ 45573323 (-)
LOC110537676 LOC106567578 coding downstream 74224 45515361 ~ 45527757 (-)
LOC110537675 LOC106567579 coding downstream 97105 45466504 ~ 45504876 (-)
gria4b LOC106567580 coding downstream 305077 45133844 ~ 45296904 (-)
LOC110537671 LOC106567583 coding downstream 529181 45030089 ~ 45072800 (-)
LOC110537682 LOC106567574 coding upstream 64781 45677378 ~ 45726321 (-)
LOC110538902 LOC106567602 coding upstream 120155 45732752 ~ 45815120 (-)
LOC118937677 NA coding upstream 204257 45816854 ~ 45820106 (-)
LOC110537687 tiprl coding upstream 255514 45868111 ~ 45878506 (-)
LOC110537691 LOC106567568 coding upstream 404786 46017383 ~ 46023676 (-)
G1078036 NA non-coding downstream 6828 45594857 ~ 45595153 (-)
G1077960 NA non-coding downstream 87703 45511065 ~ 45514278 (-)
G1077966 NA non-coding downstream 131779 45469627 ~ 45470202 (-)
G1077959 NA non-coding downstream 139860 45461824 ~ 45462121 (-)
G1078072 NA non-coding upstream 84786 45697383 ~ 45697605 (-)
G1078032 NA non-coding upstream 105189 45717786 ~ 45718072 (-)
G1078031 NA non-coding upstream 106284 45718881 ~ 45719339 (-)
LOC110537661 LOC101073377 other downstream 1001093 44546519 ~ 44601149 (-)
G1076460 NA other downstream 1146711 44454648 ~ 44455270 (-)
G1075509 NA other downstream 1827556 43774064 ~ 43774425 (-)
G1075399 NA other downstream 1941144 43660559 ~ 43660837 (-)
G1078323 LOC106567565 other upstream 590007 46202604 ~ 46206088 (-)
G1078783 NA other upstream 1203846 46816443 ~ 46817065 (-)
LOC110537706 LOC106567549 other upstream 2301954 47911648 ~ 47942039 (-)
G1081055 NA other upstream 2805824 48418421 ~ 48418884 (-)
G1081571 NA other upstream 3288811 48901408 ~ 48905274 (-)

Expression


Co-expression Network