Gene
RNA
| Item | Value |
|---|---|
| gene id | G1078085 |
| gene name | LOC106567570 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 45846797 ~ 45847092 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| HLA class II histocompatibility antigen, DQ beta 1 chain-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1227214 | True | 296 | lncRNA | 0.43 | 1 | 45846797 | 45847092 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118937677 | NA | coding | downstream | 26691 | 45816854 ~ 45820106 (-) |
| LOC110538902 | LOC106567602 | coding | downstream | 31677 | 45732752 ~ 45815120 (-) |
| LOC110537682 | LOC106567574 | coding | downstream | 120476 | 45677378 ~ 45726321 (-) |
| LOC110537679 | LOC106567575 | coding | downstream | 202726 | 45590761 ~ 45644071 (-) |
| LOC110537678 | LOC106567577 | coding | downstream | 273474 | 45558076 ~ 45573323 (-) |
| LOC110537687 | tiprl | coding | upstream | 21019 | 45868111 ~ 45878506 (-) |
| LOC110537691 | LOC106567568 | coding | upstream | 170291 | 46017383 ~ 46023676 (-) |
| foxr1 | LOC106567616 | coding | upstream | 394438 | 46241530 ~ 46243978 (-) |
| LOC110537697 | gatsl2 | coding | upstream | 475255 | 46322347 ~ 46343466 (-) |
| LOC118937925 | NA | coding | upstream | 515236 | 46362328 ~ 46362459 (-) |
| G1078117 | NA | non-coding | downstream | 3543 | 45842116 ~ 45843254 (-) |
| G1078097 | NA | non-coding | downstream | 73932 | 45772473 ~ 45772865 (-) |
| G1078096 | NA | non-coding | downstream | 77121 | 45769444 ~ 45769676 (-) |
| G1078083 | LOC106567570 | non-coding | upstream | 561 | 45847653 ~ 45851731 (-) |
| G1078119 | NA | non-coding | upstream | 5404 | 45852496 ~ 45852726 (-) |
| G1078120 | NA | non-coding | upstream | 9170 | 45856262 ~ 45856649 (-) |
| G1078148 | NA | non-coding | upstream | 53333 | 45900425 ~ 45920089 (-) |
| G1078159 | NA | non-coding | upstream | 68226 | 45915318 ~ 45944992 (-) |
| gria4b | LOC106567580 | other | downstream | 693460 | 45133844 ~ 45296904 (-) |
| LOC110537661 | LOC101073377 | other | downstream | 1245909 | 44546519 ~ 44601149 (-) |
| G1076460 | NA | other | downstream | 1391527 | 44454648 ~ 44455270 (-) |
| G1075509 | NA | other | downstream | 2072372 | 43774064 ~ 43774425 (-) |
| G1075399 | NA | other | downstream | 2185960 | 43660559 ~ 43660837 (-) |
| G1078323 | LOC106567565 | other | upstream | 355512 | 46202604 ~ 46206088 (-) |
| G1078783 | NA | other | upstream | 969351 | 46816443 ~ 46817065 (-) |
| LOC110537706 | LOC106567549 | other | upstream | 2067459 | 47911648 ~ 47942039 (-) |
| G1081055 | NA | other | upstream | 2571329 | 48418421 ~ 48418884 (-) |
| G1081571 | NA | other | upstream | 3054316 | 48901408 ~ 48905274 (-) |
