G1078083 (LOC106567570)


Basic Information

Item Value
gene id G1078083
gene name LOC106567570
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 45847653 ~ 45851731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1227212
CAGAAAGGTTCACATGTTTACTTTGGATTTACTCGATCAGATCACATAAGAGAAAAGGTATCAGGACACCAGCAATTcttgaaaaacatttatttaaacatCAACGTTTTGCAAAACAGTTCTTATTAAACATTACAAAAGCAGTTTTGGAGGGGCTAtgtctgttttgcatgttattttagcattaatacgtgtcacatatcaatttgcaaaccatgtaaaaaaatatatatcattgagttaataaagccgcatataaacatggtctcttttttgttttcttgagtaaggcagctccaaaatgcaggtgtttcagcctaggtcagtgctttctgtggtggttgggcaagccagcagaaaatacggattcgctcagtgttctgtcactcatggggacactatgtcatCGCCAAGTCCaagggtagagctagaaaattcaagccccttgggttcTGCCATATaattacattagaagtgcccatccaagaaggctcaaggtcattggccacagataaaaggaCTTCAAATCAtattatctacagtagctttgttTGGACATACTTTCAAAATATTAGCTAGCAGTTATCATCATGAATCAATTTGACAATCTACAAGCAAATCCTTTTAATCCTTTTAATCCTAATccgtcatatgaagagaaattatagataaaatgtatcggtgctcatcggccattggacaaaaACATTACACAATAAGTTTGAAatccacagtgtctcccaacccctactgtctcagcctccaggatTTATGCtacaatagtttgtgtcggggggctagggtcagcctgttatatctggagtatttatcctgtcttatccagtgtcctgtgtgaatttaagtatgctctctctttttctctctctctctcttccttaatttccttctttctttctttctctctttctttctttctttctttctttctttctttctttctttctttctttctctctctcggaggaccatgcctcaggactacctggcctgatgactccttgctgtccccagtccacttggtcatgctgctgctacagtttcaactgttctgcctgcggctatggaaccctgacctgttcactccatattaggaaggtgtacttaatgttttgtacactcagtgtatatagtcaTAATTGGAACTCTAACTgcctactctattctattatattctgatggcagagtcaggatttggcataaTCAGCATGAGTCCATagacccatcctgcctggtgtcaactgtacaggctggtggcggtggtgtaatggCGTTGGCCTTGGTTGGTGCAATGTTGGCATTTTGaataggggtgggggggggggggcagctgctAGAGGCAACAGCAGCTAAAAAGCAAACTATATCAGCTACCATCAGTTAATGACAGGGATTTGATAAGCAAGCCTTCGTCCACACGGCCTCAATCACAAGTCCCATAATCAAGTTCACCAATAAGACCCAACAGCCGTCCTGTTGAAAGTAAAACAGAGATACTGAATTAAGAGGCATGAGAATAAACCATCATCACAAGTCCCATAATCAAGTTCACCAATAAGACCCAACAGCCGTCCTGTTGAAAGTAAAACAGAGATACTGAATTAAGAGGCATGAGAATAAACCATCATCGAGCACTGAGTCTACAACAGTAGTACAGGCAGATAGCAGTACAACCAGAGATATACAGTGAGTAGCATTATCTGTGGCTTTTCAGTCATTTTTAATGAGTCTTGTGGTTCCTCACCAGTAGATTTCTTCCAGTAGATCAGTCCAGCTACTACAAAGACCACCCCCAGCAGCAGCCCACAGACACCGATCACTATCTTATTCTTCTCAGACTTAGGCAAGGAGGGGTCTGCAAATACACATTTAACAAAGATTATGGTCTCCAAACCACACGCAAAAGAAAAAGTATTTTAATCTCCCTATTCAACAGAGACATTGGGCTATACGACACAAACTGGTGAACATTTCAGAGATGACTTGTGACTGTTCTACTCTTCAGCTGATGAGTTAAGAGTTGTCTTTCCTTGTCCCCATGTTCATATTAGTGAGCCCTAAAATGAAATAGCCACTGTTCTGCAGCCCTGTTGGGGAGTCGAGTGAAGTCATTCTCACTTATACACTTACTCCACCCACACACCCTTACTCCACCCATACCCTTACCCCAGTAATAAAGTTTGGGCTCAGTCTGGCTGATGTGCTCCACCATACAGGTGATCCTCTCTCCAGTTGTGGGTGTGTACTTCAAATAGGACTGTATCTGGTAGCTCCAGAGTCCATTGGCCAGTACGTCAGTGGAGGTCACATCTGAGGTCACTTCCTCCCCGTTCCTCAGCCACGTCACTCTGATGTGTTTAGGGTAGAAGAAGTGGACACTACACACAAGGCTGGAGTCACTGGATGGCCCC

Function

NR:

description
LOW QUALITY PROTEIN: DLA class II histocompatibility antigen, DR-1 beta chain-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1227212 True 2429 lncRNA 0.43 3 45847653 45851731

Neighbor

gene id symbol gene type direction distance location
LOC118937677 NA coding downstream 27547 45816854 ~ 45820106 (-)
LOC110538902 LOC106567602 coding downstream 32533 45732752 ~ 45815120 (-)
LOC110537682 LOC106567574 coding downstream 121332 45677378 ~ 45726321 (-)
LOC110537679 LOC106567575 coding downstream 203582 45590761 ~ 45644071 (-)
LOC110537678 LOC106567577 coding downstream 274330 45558076 ~ 45573323 (-)
LOC110537687 tiprl coding upstream 16380 45868111 ~ 45878506 (-)
LOC110537691 LOC106567568 coding upstream 165652 46017383 ~ 46023676 (-)
foxr1 LOC106567616 coding upstream 389799 46241530 ~ 46243978 (-)
LOC110537697 gatsl2 coding upstream 470616 46322347 ~ 46343466 (-)
LOC118937925 NA coding upstream 510597 46362328 ~ 46362459 (-)
G1078085 LOC106567570 non-coding downstream 561 45846797 ~ 45847092 (-)
G1078117 NA non-coding downstream 4399 45842116 ~ 45843254 (-)
G1078097 NA non-coding downstream 74788 45772473 ~ 45772865 (-)
G1078096 NA non-coding downstream 77977 45769444 ~ 45769676 (-)
G1078119 NA non-coding upstream 765 45852496 ~ 45852726 (-)
G1078120 NA non-coding upstream 4531 45856262 ~ 45856649 (-)
G1078148 NA non-coding upstream 48694 45900425 ~ 45920089 (-)
G1078159 NA non-coding upstream 63587 45915318 ~ 45944992 (-)
G1078167 NA non-coding upstream 85042 45936773 ~ 45937764 (-)
gria4b LOC106567580 other downstream 694316 45133844 ~ 45296904 (-)
LOC110537661 LOC101073377 other downstream 1246765 44546519 ~ 44601149 (-)
G1076460 NA other downstream 1392383 44454648 ~ 44455270 (-)
G1075509 NA other downstream 2073228 43774064 ~ 43774425 (-)
G1075399 NA other downstream 2186816 43660559 ~ 43660837 (-)
G1078323 LOC106567565 other upstream 350873 46202604 ~ 46206088 (-)
G1078783 NA other upstream 964712 46816443 ~ 46817065 (-)
LOC110537706 LOC106567549 other upstream 2062820 47911648 ~ 47942039 (-)
G1081055 NA other upstream 2566690 48418421 ~ 48418884 (-)
G1081571 NA other upstream 3049677 48901408 ~ 48905274 (-)

Expression


Co-expression Network