G1078148


Basic Information

Item Value
gene id G1078148
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 45900425 ~ 45920089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1227281
CAACCAAAGAAACAAAGTCAAAGAAAAAAGTacaaagaaaatggtgccattggGTCATATCCCCATAAATAACGAAACATTAACATAAATCAATATGTCACATCCTGAGCAGTTCTATCAATTCTACTTCAATCAATGTCACTTTATTAGAgtgacacaaaacacacacaaagaaagtTACTTTTATATTGTAAAATGTATATGATTATATAGCCAGTTAAGTGAGCACAAATATACATTTCCCAAATCAACTGTCCACCTTGTCATTACACTTGCTCTGGAAGGAGCAAAGTCCCACGTCACCCTTCAAATCCATCAAAACATACGTTTCACTTGAGTGCACTTGTTTtgtttacaaaaacaaaaaaaatcatggCGTGAAATATTATTTTGGGTCACAGACATTTACCCTGATACTAGTGGAGGAAGGGGAGTGTGTTTGTGaacaagagagtgtgtgtgagtgtatgtgtgttagtgagaaggagagagttcACTGATCAGGTACACCAAACCTACATCTAGTTAGTTCTATTTGTGTGGTACGGTGAAATTTTTTCTCTTCATGATAACAGGTCTTGATATTGCAGTAGCGTGCGTGTTTCTGCCAGGATCCGCTACCTCACAGTACAGGAACCTTTCTCTTTCCTCTACTTCTGCTCCTGTCGCTTCTGAaaagcCTCCTCCCTGGGTTTGTCTTCCTTCATTTTCTTGCGAGTCATGTGACCACGGAAGCTGGCCTGGATCTTGGCAGCAGCCTTGTTGGCCTCGGGGTCATCCAAGGGGATGTCCATGATGTCCTCCTCGTGGGTCTTGGGACACCCGTCATTTAGACATTCCATTGCgagagaatggaaaacaaaaATCCTATATAGAAACGTAAAGTTCACTTCTCAGAGTTTTTGGTTGATATTTATGAACAATCCCCGTCTCCGTTCGTGCGTTTCTCTCCGGTGGATCTTCTACTCCTGTATGGCAGTGCctgtgtgaagctagccacaatagtggaattttcGGTTCGccatcaaaataaaagtcccctaATGAAAGTGATTCAAACGGATACAGTAGCTTACGCACATTCATTCTCCAATCAGCTGCTAGCAGTGCAGGAACGACCTCTGACGTTATCCTTGCTCTGCCCTATGATCACaaaacaaaacattacaaaaGTGTAAG
>TU1227282
CAACCAAAGAAACAAAGTCAAAGAAAAAAGTacaaagaaaatggtgccattggGTCATATCCCCATAAATAACGAAACATTAACATAAATCAATATGTCACATCCTGAGCAGTTCTATCAATTCTACTTCAATCAATGTCACTTTATTAGAgtgacacaaaacacacacaaagaaagtTACTTTTATATTGTAAAATGTATATGATTATATAGCCAGTTAAGTGAGCACAAATATACATTTCCCAAATCAACTGTCCACCTTGTCATTACACTTGCTCTGGAAGGAGCAAAGTCCCACGTCACCCTTCAAATCCATCAAAACATACGTTTCACTTGAGTGCACTTGTTTtgtttacaaaaacaaaaaaaatcatggCGTGAAATATTATTTTGGGTCACAGACATTTACCCTGATACTAGTGGAGGAAGGGGAGTGTGTTTGTGaacaagagagtgtgtgtgagtgtatgtgtgttagtgagaaggagagagttcACTGATCAGGTACACCAAACCTACATCTAGTTAGTTCTATTTGTGTGGTACGGTGAAATTTTTTCTCTTCATGATAACAGGTCTTGATATTGCAGTAGCGTGCGTGTTTCTGCCAGGATCCGCTACCTCACAGTACAGGAACCTTTCTCTTTCCTCTACTTCTGCTCCTGTCGCCCTGGGTTTGTCTTCCTTCATTTTCTTGCGAGTCATGTGACCACGGAAGCTGGCCTGGATCTTGGCAGCAGCCTTGTTGGCCTCGGGGTCATCCAAGGGGATGTCCATGATGTCCTCCTCGTGGGTCTTGGGACACCCGTCATTTAGACATTCCATTGCgagagaatggaaaacaaaaATCCTATATAGAAACGTAAAGTTCACTTCTCAGAGTTTTTGGTTGATATTTATGAACAATCCCCGTCTCCGTTCGTGCGTTTCTCTCCGGTGGATCTTCTACTCCTGTATGGCAGTGCctgtgtgaagctagccacaatagtggaattttcGGTTCGccatcaaaataaaagtcccctaATGAAAGTGATTCAAACGGATACAGTAGCTTACGCACATTCATTCTCCAATCAGCTGCTAGCAGTGCAGGAACGACCTCTGACGTTATCCTTGCTCTGCCCTATGATCACaaaacaaaacattacaaaaGTGTAAG

Function

NR:

description
neurogranin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1227281 False 1179 lncRNA 0.41 3 45900425 45920089
TU1227282 True 1162 lncRNA 0.41 3 45900425 45920089

Neighbor

gene id symbol gene type direction distance location
LOC110537687 tiprl coding downstream 21919 45868111 ~ 45878506 (-)
LOC118937677 NA coding downstream 80319 45816854 ~ 45820106 (-)
LOC110538902 LOC106567602 coding downstream 85305 45732752 ~ 45815120 (-)
LOC110537682 LOC106567574 coding downstream 174104 45677378 ~ 45726321 (-)
LOC110537679 LOC106567575 coding downstream 256354 45590761 ~ 45644071 (-)
LOC110537691 LOC106567568 coding upstream 97294 46017383 ~ 46023676 (-)
foxr1 LOC106567616 coding upstream 321441 46241530 ~ 46243978 (-)
LOC110537697 gatsl2 coding upstream 402258 46322347 ~ 46343466 (-)
LOC118937925 NA coding upstream 442239 46362328 ~ 46362459 (-)
LOC110537698 LOC106567561 coding upstream 462413 46382502 ~ 46689581 (-)
G1078120 NA non-coding downstream 43776 45856262 ~ 45856649 (-)
G1078119 NA non-coding downstream 47699 45852496 ~ 45852726 (-)
G1078083 LOC106567570 non-coding downstream 48694 45847653 ~ 45851731 (-)
G1078085 LOC106567570 non-coding downstream 53333 45846797 ~ 45847092 (-)
G1078117 NA non-coding downstream 57171 45842116 ~ 45843254 (-)
G1078167 NA non-coding upstream 16684 45936773 ~ 45937764 (-)
G1078160 NA non-coding upstream 43930 45964019 ~ 46008083 (-)
G1078240 NA non-coding upstream 158030 46078119 ~ 46081042 (-)
G1078306 NA non-coding upstream 272829 46192918 ~ 46290067 (-)
gria4b LOC106567580 other downstream 747088 45133844 ~ 45296904 (-)
LOC110537661 LOC101073377 other downstream 1299537 44546519 ~ 44601149 (-)
G1076460 NA other downstream 1445155 44454648 ~ 44455270 (-)
G1075509 NA other downstream 2126000 43774064 ~ 43774425 (-)
G1075399 NA other downstream 2239588 43660559 ~ 43660837 (-)
G1078323 LOC106567565 other upstream 282515 46202604 ~ 46206088 (-)
G1078783 NA other upstream 896354 46816443 ~ 46817065 (-)
LOC110537706 LOC106567549 other upstream 1994462 47911648 ~ 47942039 (-)
G1081055 NA other upstream 2498332 48418421 ~ 48418884 (-)
G1081571 NA other upstream 2981319 48901408 ~ 48905274 (-)

Expression


Co-expression Network