G1077322


Basic Information

Item Value
gene id G1077322
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 46004151 ~ 46008609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1226400
TGTgaatagtttgggtagccatttgactagatgttcaggagtcttatggcttgggggtagaatctgcttagaagcctcttggacctagacttggtgctccggtaccgcttgccgcgtGGGAGCAGAGGgatcagtctatgactagggttgcTGGGTCTTTTCAATTTtcaggtccttcctctgacaccacctgggaTAGAGGTCCtagattgcaggaagcttggctccagtgatgtactgggccatttgcactaccctctgtagtgccttgcggtcggtggccgagcagttgccataccagacagtgatgcaaccagtctggatgctctcgatggttgagctgtagaaccttttgaggatctgaggacccattctaaaccttttcattctcctgagggggaataggttttgtcgtgcccgcttcacgattgtcatggtgtgcttggaccatgttagattgttggtgatgtagacaccaaggaacttgaagctctcaacctgctccactgcagctccgtcgatgagaatgggggcatgctcggtcctcgaTTCGATCGCCGCCTActcctcagaaggcagcccggcctccggcctctctttctctgcctcctcttcacgcagatcattTGGGtcgggcctgttcccgagggagtCTTATATCCTCCCcctcgggctcgtcagagtcgtgaaagaagaaaaaggattctgctagtccatggtgagtaatcacagtcctgatgtctataatttattttcggtcataagagatagcaacattatgtacaaaaatagtttaaaaagaaaataaaaaaagtaataaacaaaaaaacacaatcggttgggggtatgtaaaacgtctgccttctgctcTGGCACCATTTTAACATTTGTGTCCTCATTACATGCACATGTTTTGCAACGGGACCACTTTTGATAGATTTAAACAAACAATATTGGAATCACCATGGTCACACCCGTAAACTGTCAACACCATCTGTCTGATTAGAATATACATTTTGGTTCAAAGATGTTACTTTTAATATGGTTCAGAGTCAAAGCAACTGGGGAAAAACACAATTGGTTCTGTGTATACCACTCGAATGAAGAAAAATTATAATTTTTATCAACTCGGTCAGAGTGCTGAAACATCTGAtagaatggttgttttattttatttggggggggggggtccatgaaGATAAATGTTAGGACTTGCGTCAGCTCCTAAAGTATGTTTGTGGAAGAAGTTTAAATCGATTTACTTAAGTGAAGTGGTGAAATATAGTCAAAgttcaaaatgtaaaaatatctAGTCTGATTACTTTGACTATATTAACCTTATTACTTTGGACTATGGGGAAGTTAGAGCACATATTTAATCAGAAATAATAATCTCAGACTAATACACTTTCACTCATGAGAAATTAGAAAAAGTTTGAGTATCATTTGGGAAGAGAAATATGATGGTGCATCGGGTGGAAGAAATTGAGAATTTCGTTAGTGTTTAAAACAAATTTGTTAGTTGGCAAAATATAGTAAACATTTAAGGTTGAgtaagtaaacaaacaaaaaaatccacAAATATACCAACATTTCTATAAAACGTAAACAGTTTGATTAGTGAATGCCATAGTGTAGTTATTTTGTAAGATACTTCTCCCTAGAAGctgaaataatatttttttaaagccatTTTAGCTGTTGTGCTAGTTTGGTCTGAACAGATTCACAAATCATTGGAAATTGTCACACTATGCAGACGTCTCCCTCCGAGGCACGTATTGCTAGGCCACCCCCCTGCACTTGCCTAGGCATGCCTGCTAACGCCGTGGTTAAAGCTAGTGTGAgctttctctgcagatcctctccggctctgtcaagttggatggggagtgtcgctgcacagctattttcaggtctctccaaggatgttcgatcgtgttcaagtccgggttctggcagacccactcaaggacaatcagagaattgtcccgaagccactcctgcgtggtcttggctatgtgcttagggtcgttgtgctTTTGGTAGTTGAACCTTTGCCCTAATCAGGTCTGAAGTAGGTTTTCTTAAAGGAACTCActttactttgctccgttcatctttccctcgatcctgactagtctcccagtccctgacgctgaagaacatccccataatgctgccaccaccatgcttcaccgttggggtggtattggccaggtgattaGCGGTGactggttttctccagatgtgaggcttggcattcataccaaagagttcaatcttggtttcatcagaccagagaattttgtttctcacggtctgagtcctttagctgccttttggcaaactccaaacgggctgttatgtgccttttactgaggagtggcttccatctggcctgattggtagaatgctgtccttctggaaggttctcccatctccacagaggaactatggagctctctgagtgaccattgggttctttgtcaccttcctgaccaaggcccttctcccccaattgctcagtttggctgggcggccagctctagaaagcgtcttggtggttccaaaattcttccatttaagaacgagggaggctactgtgttcttgtggaccttcaatgctgcagattatTTTTGGGtccccttcaccagatctgtgcctcgacacaatcctgtctctgtgctctacggacaattccttcgacctcatggcttggtttttgctctgacatgcactgtcaactgtgtgaccttatatagactggtgtgtgcctttccaaatcatgtccaaacaactaaatttaccacaggtggactccaagttgtagaaaaatctcaaatatgatgaatggaaacaggatgcacctaagctcaatttcgagtctcatagcaaagtgtctgaatacttatgtaaataaggaatttctgttttttatttgtaatacatttgcaaacatttcttaacctgttttcactttgtcattatgggatattgtgtgtagattgatatagaacatgttttatttaatccattttagaataaggctgtaatgtaacaatgtggaaaaagtgaaggggtctgaatactttccgaatgcactgtatactcaGTTTTAGGTACACATCTTTACTGAACAAATATATGAACGCAAcatttaatgagctgaaataaaatattgcAGAAAATGTACatacatatttctctcaaatgttgtgcacaaattggtttacatccctgttagtgagcatttctaaaagataatccatccacctgacaggtgtggcatatcaagaagctgattaaacagcatgatcattacacaggtgcaccttgtgctgggggcaataaaaatCCTCTCTAACATGTGCAgtattgtcacacaacacaatgccacagtctcaagttttgagggagcgtgcaattggcatgctgactgcaggaatgtccaccagagctcttgCCAGATAATTTCAtgttttaatgcacagagataccgtgacgagattctgaggccaattgtcgtgccattcattcgcccccatcccctcatgtttcaacatgataatgtGCAACCCAATGTCGCAAAGATCTGTAAACAATTTGTGCAAGCTGAaactgtcccagttcttccatgccctgcatactcaccagacatgtcacccattgagcatgttttagAAGCTCTGGATTGATATGTACGactgcgtgttccagttcccgacaatatccagcaacttctcacagccgCCGAACTGGAGTAGaccaacattccacaggccacaatcaacagcctgaccaactttatgtgaaggagatgtcgcgctatatgaggaaaatggtggtcacaccagatactgactggttttatgatccacacccctacttttttttatactttaaaaattttttttaacctgtctGTTACCAACAGATGTGTACCTCTATTCTCAGTCatgggaaatccatagattaggacctaaggatttttttttttttattgactgatttccttatgaactgtaaatcttggaaattgttgcattttacatttttgttcagtgtaatatgtGCACGAAAgttcagagaaataagcttttttgcatatggaaaatttctgggatcttttatttcagctcaagaaacatgggaccaacacttttaaatgttctttatttttgttcagtgtatattcaaagtagatgtatttttttttacatgatttACATctgtggctcagttagtagaggatggcgcttgcaacgccagggctgagggtttgattcccatggggaaccagtacgaaaatgtatgcactactgtaagtcaccctggataagagcgtctccaaaaatgactaaaatgtaaacaaataaATATGTGCATTTAATGTATGAACATCA

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1226400 True 4407 TUCP 0.42 3 46004151 46008609

Neighbor

gene id symbol gene type direction distance location
LOC110537690 spx2 coding upstream 1449 45982876 ~ 46002702 (+)
LOC110539148 NA coding upstream 26751 45968529 ~ 45977400 (+)
LOC110537689 LOC106567569 coding upstream 66386 45928699 ~ 45937765 (+)
nrgna NA coding upstream 83886 45900621 ~ 45920265 (+)
LOC110537686 LOC106567570 coding upstream 155381 45845245 ~ 45848770 (+)
LOC110537692 LOC106567567 coding downstream 29937 46038546 ~ 46050937 (+)
LOC110537693 LOC106567566 coding downstream 44996 46053605 ~ 46078913 (+)
LOC110538903 LOC106567565 coding downstream 84976 46093585 ~ 46213822 (+)
LOC110537694 LOC108439963 coding downstream 221557 46230166 ~ 46240135 (+)
p47phox ncf1 coding downstream 253627 46262236 ~ 46284100 (+)
G1077399 NA non-coding upstream 43825 45960099 ~ 45960326 (+)
G1077355 NA non-coding upstream 80370 45876933 ~ 45923781 (+)
G1077325 NA non-coding upstream 152462 45848815 ~ 45851689 (+)
G1077328 NA non-coding upstream 159412 45843716 ~ 45844739 (+)
G1077520 NA non-coding downstream 201404 46210013 ~ 46210346 (+)
G1077582 NA non-coding downstream 286330 46294939 ~ 46295173 (+)
G1077590 NA non-coding downstream 310804 46319413 ~ 46325035 (+)
G1077741 NA non-coding downstream 518003 46526612 ~ 46526863 (+)
G1077158 NA other upstream 390386 45611545 ~ 45613765 (+)
G1075958 NA other upstream 1528485 44473748 ~ 44475666 (+)
G1075963 NA other upstream 1552211 44451306 ~ 44451940 (+)
G1075891 capns1 other upstream 1564967 44430077 ~ 44439184 (+)
G1081353 NA other downstream 2738346 48746955 ~ 48747499 (+)
LOC110537713 LOC106567542 other downstream 3253711 49262142 ~ 49300347 (+)
G1082266 NA other downstream 3670414 49679023 ~ 49680804 (+)
G1086237 LOC106567502 other downstream 6640995 52649604 ~ 52657495 (+)
G1087914 NA other downstream 8101081 54109690 ~ 54148962 (+)

Expression


Co-expression Network