G1078240


Basic Information

Item Value
gene id G1078240
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 46078119 ~ 46081042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1227383
TGTGTTTAATGAAAGTAataaactgtaacaatgtatgaATTGGACCATTGATAGATCACACTGAAACACATTGCAGATTTTAAAGTGTGATGCACTTCTGAAACATTCCTTAAAAAATACCAGTGCTGATTTTTTTATGTTAATCATTTCATTTTTCTAAAGTTCTGGCCCCTCTATAATATTGAATCATTTCACAACCtaaatatatttgcaaacattatATACACAAATACAAACAATAGACAACATCATTATGTAAGATTGCTGTCTTTTACTATGTACACCTTCACACAATTATTGTCACACCTGAACCCCTGATGAATAACAAAGAAAATATCCAAATGAACCTCACTGTACCCAATAcgataacactttacttgacacccagggTCATAACACATGATGACATGATCATAACCATGCCATGATATGTCATAACAgatgacataacttgtcataatagGATCacaacactgtcatgacacaaatttagacctgttgtgaaaTATATtacgttattttatggctggttatgacacctacataagagtgtcaaaccCGACAAAACTACCACACcaggcaaaacattccattacaccacaGCCTACTTGTTTGTGCTatataacattttctgaaatgTACCATATTAAATTAGCATTGTAACTGTGCACACATTGATGTCAAacatgcacctaccccaatgctctgtttcTAATGACTAGGATGAACACAGAAACAGATTTCAGGAGCACGGGAAGACTATTTTTGACTGATTACAGATGTAAGGGCATGTATGTGATAGGCCTATCTtgcttatatgattatgatggtcatactGCTTCTTGGTAGTGTcataaagtgtattttcttagtccatgTGACACAGGGTGGTTATAATGGTTTATGACCGTGTCAAAAAGTATATTTTCTACAAGTTAGTAGAAAATTATTTAAAATAGTTATTTAAaataagatgggggggggggggacatgactGTAAAGAATTCATAACAAAAATAAAGGACAAAGGACAAACTTTCAAAtgaaaggaaacttcttggcagggaCAAAGCATTTGaataggtgtcataaccagccataaaataacgcaatatatgccacaacaggtgtaaatatatgggtcatgacagtgttaagACCATGTTATGTCAGGTGTTATGACATATTACGATATGGTTATGACCATGTCATAACTTgttatgacgctgggtgtcaaTTAAAGTGTTACTAAACAAAACAATGTACATGGACAGCTCAACTGAATCCAACATATACAACTGTATAGGCTACATGCATTTTCCGGtggtcaaatacatttaaataaaatgtaacctttatttaataaaggccatttaaaaatgtttgcctacccaggtttttttttttacacctttttcaaatagaaaaacaaaaaaaatattttctgtgtTCACAACAATGCCTAAACCACATCAGGGGACGACTTTTGAGGTCTAGGAAAAATCTAAgaaatttagtttttttttgtgtgtagttgccCTTTATTTCAGTGAGCATGCCCTGCACTGTTGTTTGGTGAGTAGATTTTATGTAGTGCAGTAagcacatacactaccgttcaaaagtgtggggtcatttagaaatgtccttgtttttgaaagaaatctACCATTTTtggttcattaaaataacatcaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaatggtaGATGAAAAAAAATGGAATGTCTCATAGCCGTAAAGAggcccatcagcaaccatcactcctgtgttctaatggcacgttgtgttagctaatccaagtttataattttaaaaggctaatagatcattagaaaacccttttgcaattatgttagcacacctgaaaactgttgttctgattaaagaagtaataaaactggccttctgtagactagttgagtatctggagcatcagcatttgtgggtttgattacaggctcaaaatggccagaaacatagatctttcttctgaaactcgtcagtctattcttgttctgagaaatgaaggctattccatgcgagaaattgccaagaaactgaagatctcgtacaacgctgtgtactactcccttcacagaacaaaaatgtgattttaaacctaaccctaacttatGAAGGCCAATGTGTTGGTCCACCAGACCTTCTGCGCATTTGGGCAGAAGTGTTTGAGGTTAGGAGTAATGTGAATAACATGACATCACTTTAGAGCCTTATGCCATGCTTCAGCACAACATGTCACCCTTTTATAAAGCACATgtttatatcacatttgacatagTGGGTTATGGCAGTTGACATTGGTGATTATGTCACATAGTTAggccacatttatgaaccctttataaaccATAAAATACAGTTAAAGATACTGTGCAACAcatttatgtagtgcttatgaaggcATCATGAAGCTTCTATAATTTGAACATAATTTAAAGCGGGACCAAGTATTGTATATGACATTTGACAATATGTGTGTTTGATGGATTGTATCCATTTCTGATTCCCTTCATTGACATCGGTAGTTTTAGTTCTCTTCCACAACAGGCAGGATTTCTCAGTGGTGATAGGGCATAGGGTTCCATGTGCGATACCACGACCTGAAACGTAAACATAACAGATTCATCGCTCATCTGTACAATGCCATGTTGCCATTACAGCACTAGAATAATCTTCTGGGTGTCTCtaaaatgacaccatattccctatgtattgcattacctttgaccaggccatagggctctagtcaaatgtagtgtactatatactgtGGGTAATGGGGTGCAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1227383 True 2866 lncRNA 0.36 2 46078119 46081042

Neighbor

gene id symbol gene type direction distance location
LOC110537691 LOC106567568 coding downstream 54443 46017383 ~ 46023676 (-)
LOC110537687 tiprl coding downstream 199613 45868111 ~ 45878506 (-)
LOC118937677 NA coding downstream 258013 45816854 ~ 45820106 (-)
LOC110538902 LOC106567602 coding downstream 262999 45732752 ~ 45815120 (-)
LOC110537682 LOC106567574 coding downstream 351798 45677378 ~ 45726321 (-)
foxr1 LOC106567616 coding upstream 160488 46241530 ~ 46243978 (-)
LOC110537697 gatsl2 coding upstream 241305 46322347 ~ 46343466 (-)
LOC118937925 NA coding upstream 281286 46362328 ~ 46362459 (-)
LOC110537698 LOC106567561 coding upstream 301460 46382502 ~ 46689581 (-)
LOC110537699 LOC106567556 coding upstream 830415 46911457 ~ 47297035 (-)
G1078160 NA non-coding downstream 70036 45964019 ~ 46008083 (-)
G1078159 NA non-coding downstream 133127 45915318 ~ 45944992 (-)
G1078167 NA non-coding downstream 140355 45936773 ~ 45937764 (-)
G1078148 NA non-coding downstream 158030 45900425 ~ 45920089 (-)
G1078306 NA non-coding upstream 111876 46192918 ~ 46290067 (-)
G1078342 ncf1 non-coding upstream 145349 46226391 ~ 46284095 (-)
G1078292 LOC106515459 non-coding upstream 153708 46234750 ~ 46236938 (-)
G1078373 NA non-coding upstream 211363 46292405 ~ 46292660 (-)
G1078374 NA non-coding upstream 211704 46292746 ~ 46292969 (-)
gria4b LOC106567580 other downstream 924782 45133844 ~ 45296904 (-)
LOC110537661 LOC101073377 other downstream 1477231 44546519 ~ 44601149 (-)
G1076460 NA other downstream 1622849 44454648 ~ 44455270 (-)
G1075509 NA other downstream 2303694 43774064 ~ 43774425 (-)
G1075399 NA other downstream 2417282 43660559 ~ 43660837 (-)
G1078323 LOC106567565 other upstream 121562 46202604 ~ 46206088 (-)
G1078783 NA other upstream 735401 46816443 ~ 46817065 (-)
LOC110537706 LOC106567549 other upstream 1833509 47911648 ~ 47942039 (-)
G1081055 NA other upstream 2337379 48418421 ~ 48418884 (-)
G1081571 NA other upstream 2820366 48901408 ~ 48905274 (-)

Expression


Co-expression Network