G1078306


Basic Information

Item Value
gene id G1078306
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 46192918 ~ 46290067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1227457
gtctctatcagttttgcacatcgagaaactgaaatgttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtggctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatatgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttgtattcaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttttacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttcatttggttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatatatttagactCTACATTATCAACATTTCTACACCGCTAAAAAACATTATGTTAAATTGTGGGCACCTACCGATTGTCTTGTCTTTGTTGACCTTCCAGGAGAGAGGTCCCTCATGCACCATCTTCCTCTTGGTCAGGTCCAGgctCTTGAACTCTGAGATCATTGGGTTCTCACTCTGTTTGAGTGAGGACAGGTCCAGGCGTCTTTGGTAGTCCTCTAACCTCTGTTTGTTCTCTGCCTCTTTCACTGTCTGGTTGACATAGTTGAGGATCTTCCTGCAGCACTCCCCGGCCCTCTTCACCTTGTCCCTCTCCGCTGCATCCTCTGTGTACTTGGCTATGCTCTCCAGCAGCAGTGGATACTTGGTCAGCCTCTGCATCTCCACTGGAATTATATCCTTCAGCTGGAGTCTGCGACACAGGCGGTTGCTCTCAGCCTCCTTCGGGAAGAGACgcacacccgagtcaatactaCAGTCACTCACTCCAGATCACCTCAGTTCATCCATGTCTTGAATCTCCCAATCTATAACTGAGCTTGTGTGGTTACGATGATGCCCTCTAAGTCACGCTTGAGGGAGTGAATAATGTTGTATTGTTCTATATTAAATTGCAACgtgtagtgcagtatagtataatactgtatatcgcACTAcattagtatagtataataaagtATTGTATAGTACATCATAgcatagtataatagtataacaTGCCATAGTTTAGAAAAGCATAGCATATAGTTTGGCATTCATGGGTTGCACCTCACG

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1227457 True 2128 lncRNA 0.43 5 46192918 46290067

Neighbor

gene id symbol gene type direction distance location
LOC110537691 LOC106567568 coding downstream 169242 46017383 ~ 46023676 (-)
LOC110537687 tiprl coding downstream 314412 45868111 ~ 45878506 (-)
LOC118937677 NA coding downstream 372812 45816854 ~ 45820106 (-)
LOC110538902 LOC106567602 coding downstream 377798 45732752 ~ 45815120 (-)
LOC110537682 LOC106567574 coding downstream 466597 45677378 ~ 45726321 (-)
LOC110537697 gatsl2 coding upstream 32280 46322347 ~ 46343466 (-)
LOC118937925 NA coding upstream 72261 46362328 ~ 46362459 (-)
LOC110537698 LOC106567561 coding upstream 92435 46382502 ~ 46689581 (-)
LOC110537699 LOC106567556 coding upstream 621390 46911457 ~ 47297035 (-)
LOC110537700 LOC106567555 coding upstream 1336589 47626656 ~ 47658365 (-)
G1078240 NA non-coding downstream 111876 46078119 ~ 46081042 (-)
G1078160 NA non-coding downstream 184835 45964019 ~ 46008083 (-)
G1078159 NA non-coding downstream 247926 45915318 ~ 45944992 (-)
G1078167 NA non-coding downstream 255154 45936773 ~ 45937764 (-)
G1078373 NA non-coding upstream 2338 46292405 ~ 46292660 (-)
G1078374 NA non-coding upstream 2679 46292746 ~ 46292969 (-)
G1078380 NA non-coding upstream 12869 46302936 ~ 46303323 (-)
G1078381 NA non-coding upstream 13427 46303494 ~ 46303699 (-)
G1078384 NA non-coding upstream 15403 46305470 ~ 46305720 (-)
gria4b LOC106567580 other downstream 1039581 45133844 ~ 45296904 (-)
LOC110537661 LOC101073377 other downstream 1592030 44546519 ~ 44601149 (-)
G1076460 NA other downstream 1737648 44454648 ~ 44455270 (-)
G1075509 NA other downstream 2418493 43774064 ~ 43774425 (-)
G1075399 NA other downstream 2532081 43660559 ~ 43660837 (-)
G1078783 NA other upstream 526376 46816443 ~ 46817065 (-)
LOC110537706 LOC106567549 other upstream 1624484 47911648 ~ 47942039 (-)
G1081055 NA other upstream 2128354 48418421 ~ 48418884 (-)
G1081571 NA other upstream 2611341 48901408 ~ 48905274 (-)
G1081813 NA other upstream 2697945 48988012 ~ 48988353 (-)

Expression


Co-expression Network