G1078342 (ncf1)


Basic Information

Item Value
gene id G1078342
gene name ncf1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 46226391 ~ 46284095 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1227500
TATATTATTTATTTCGTAGGTTACAAATAGCTTATTTCAGCAAACAAATAAAGAAGCTTATATTCCAAAAACTGCATATGGCGTCGCAAACACATTTACTAACCACACACTTTATAAAAAAGTAACAGAGAAAATGGACACTTCAAAATTTGTAATACACCGGTGTCATTTTAGGGTAACTtattgtatactgaacaaaaatacaaacacaacatgtaaagtgctgtcacatgtttcatgacctggaataaaagatccctgaaattgTGATGGGACAATAAAaatccactctaaaatgtgcagttttgtcacacgacacaatgccacagatgtctcaagttgagggagcttgtgattggcatgctgactgcaggaatgtccaccggagctgtttccagagaattgaatgttaatttctctaccatatgctGCCTCCAGCGTCATTTTGGAAAATGtgtcagtatgtccaactggcatcaaccacagaccacttgtaaccatgccagcccaggacctccacatcttcacctgcaggattgtctgagacaagtcacccagacagctgatgaaactgaagtgcatttctgtctgtaataaagcctttttgtgaggaaaactcattctgattggctgagccaGGCTCCCTCAATTAGGGCCTGATGAATGTATTTAAATgaactgatttccttctatgaactgtaactgaaATGAACTGTCATTgacattgttgcatttatatttttgttcagtatacataaagAAAACcgatatgaaaataccctcaaataaaaggtgacattctgtactgtcgcctcatatTTCTATAGCCAAATGAAATGTTtttgcttcactgtccaaataaataggTATAGGAGTGTACATTTACATTTCACTATTGTTTTACTTTCTCCAAGCAGTTAGTTAGTCCTAAGTGTTTACATTTAGAACAAAATGCAAAGTGCCCTCAAAGGCACACATGGTTGGCTTTATCTGCTGATCAGTTTGTATTGCACACATTAACCTATCTTTCTTTGCATTCCATTACTGACACAAAGTTTAAAGCTCAGTTCGTCTTGCGGACGCTGACTTTTTTGCAGGTGTTCTCCGTGCAGCGCTCCATGATGAGTTCAGGACTGGGCcgaggggggatgaagggagcCCCTTTCTTCAGCTCGCCCCCTGGACTAGAGCCTGCTGGCTTTGGGATGTTGTCTGAAAGTCAATCGGTAGAAAACTGTGAAGGCCTTATTTTAGAAACGGTCATTGAAATTGGTAAAAGGTTAAACAATGAAATTATGAGAACTATAACAGTTGGACAATGGATGCAGATACTCCAAATGTTTGAATTCCCATCAGATATTGATTGAATTATAGCACACACAACATTGTACTGGCAGAGACAAATAATTAAAGGGGTCTGAACTGGCTGATTTCGCCTCGGTTTTCCACCCTCCTCGTTAATAAATGCAACTGAAAAGACAAGATTTGCATCTTGGAGGTGTGCTTTGATGTGGGTGTGTTTCTTGTGGGATTTTTCTCACATGGGAAGCATTCGTACATTCACTCTGGCAaaacttcaacacagttagtcacTCACCTGTCTATAATGTGAAAACAGTCTGCTAGGGAGAGTTAAGAGgtagctagcaagctagccaactgtAGCCAAGCTAGCCAACTCTAGCTCGCTGAAGCCAGTGTGCGACTGCGGCAGAATTTGTTTGATGTTGGATATCTCTATTGGGCTAACTTCATCACGGTCAGTGTGCTTTCCGAGCAGGTTCAGAGAGAGAATTTATGAATGATCAACCACGTGTTAAGCTGAAACTACATGGAGAGACGCCCGTCAACAGCATGACATTTGTGTTTGACAGTAGGGAGTGTCAATTCACATACGCTGTGTAGTGCATGCCAACTTAATTGCCATGAAAATCCATAATAAACAGTTGTATTTATGTTCGCTgtgggagaacttgcacaattggtggctgactaaatacacaatacacactaaACACCTATAAAACCACACTAAACCTGTCCAGTTTGTGGTTTAACTGTTACCAGCCTTCTTGCGCTCTATTTTAATGGTGAATTACCCCGTAtcatttattaaatgttttattgaaagtttatttaactaggcaagtcagctaagaacaaattctaatttacaatgatggcctaccaaaagtcCTCCTGCGGGGATGAGGGcg
>TU1227499
TATATTATTTATTTCGTAGGTTACAAATAGCTTATTTCAGCAAACAAATAAAGAAGCTTATATTCCAAAAACTGCATATGGCGTCGCAAACACATTTACTAACCACACACTTTATAAAAAAGTAACAGAGAAAATGGACACTTCAAAATTTGTAATACACCGGTGTCATTTTAGGGTAACTtattgtatactgaacaaaaatacaaacacaacatgtaaagtgctgtcacatgtttcatgacctggaataaaagatccctgaaattgTGATGGGACAATAAAaatccactctaaaatgtgcagttttgtcacacgacacaatgccacagatgtctcaagttgagggagcttgtgattggcatgctgactgcaggaatgtccaccggagctgtttccagagaattgaatgttaatttctctaccatatgctGCCTCCAGCGTCATTTTGGAAAATGtgtcagtatgtccaactggcatcaaccacagaccacttgtaaccatgccagcccaggacctccacatcttcacctgcaggattgtctgagacaagtcacccagacagctgatgaaactgaagtgcatttctgtctgtaataaagcctttttgtgaggaaaactcattctgattggctgagccaGGCTCCCTCAATTAGGGCCTGATGAATGTATTTAAATgaactgatttccttctatgaactgtaactgaaATGAACTGTCATTgacattgttgcatttatatttttgttcagtatacataaagAAAACcgatatgaaaataccctcaaataaaaggtgacattctgtactgtcgcctcatatTTCTATAGCCAAATGAAATGTTtttgcttcactgtccaaataaataggTATAGGAGTGTACATTTACATTTCACTATTGTTTTACTTTCTCCAAGCAGTTAGTTAGTCCTAAGTGTTTACATTTAGAACAAAATGCAAAGTGCCCTCAAAGGCACACATGGTTGGCTTTATCTGCTGATCAGTTTGTATTGCACACATTAACCTATCTTTCTTTGCATTCCATTACTGACACAAAGTTTAAAGCTCAGTTCGTCTTGCGGACGCTGACTTTTTTGCAGGTGTTCTCCGTGCAGCGCTCCATGATGAGTTCAGGACTGGGCcgaggggggatgaagggagcCCCTTTCTTCAGCTCGCCCCCTGGACTAGAGCCTGCTGGCTTTGGGATGTTGTCTCCGTTTTCCTTCTCCTGCAGGGGAGACTGTGTGGCGTCATTAGAGGTCTTCCTGGGCTGATTGGGCCAGTCGCCTTTCTGCAGCAGGAAGCGGCGACTGTTCCTGCGGTACGTGTTCTGGCTGATGCCCTTGCGCCCTTTACCGTGAATACTCTGGGCATTGCGGATTGTAGACCGTCTGGGTGGTGGTATCTGTCTTCTAATCAcgttctcctccatctccttcttctCTCCAGTTTTGTGGAGAAACATAGAGGGGAAgtgtcctgtctcctctcctttcCTGACCACCCACCATCCATCCAGCAGCTTGTGAATGACCTCAATAGTTTCTCCAGTCTCAAGAGTTAGCTCATCATCTTGTGCTGCCTTGTAGGCTTGGGTGGTGATATAGAGTTCTCCTGCATAGTTGGGATCAGCGTCTTCAGGCTCCTCTGGTCCATCAAGGGGCTCCAGGTAAGAGGCGGGCACCCAGCCACGCTTGATATCACACTGGCAGAACCACCAACCATTTGGGCTTTTCTCCACAATCTCCACTAAGTCTCCAGTAAGAAGGTTGATCTCATACTTGGAGGTCTTGCTGTAGTCAGAGATCACCCTGTAGCTTTCCAATATGATGGGGCCAGAGATTTCAGAAGTGTTGCCTCTGGCCTTGTCCGTGGACATCACGATGGCCTCATTTCTTTTGAATGGCTGTTGAGCGGGTGGGTTCTCGTCCTCCGGTCGGACCTTGAAGAAGTTGCATACCAGCTGGCAGCGTGATATCTTGGGGGGCAGGTTGATGAGAGAGTGACAGTATTCAGCCAGAGTGCTCTGCCTGGTCTCGGTGCTCTTTTGGCTGTCCAACCATTTTGGCGCTGAGGATAGGAGGGACAGAAAGGAACATTTAAAAAATTGCAGGTCAATTAAAATGGAATATTCAAAATACCACACTACAGTGTTGGATGTAGATGTTATATGTTTATCTCTGAAAAGGTGGAACTTTGAATTGGACAAGGAACTAAATGCATATTGCAGTTTCCTCTTAATGTATCACACTGTCATTAAAGCTActtgtaaaaataaatatttgacctttatttaactacacaagtcagttaagaacaaattcgtattttcaatgacagcctaggaacagtgggttaactgccttgttcaggggcagaatgacagattattatttatttttttgcctgtccacgagcattctcttgcctaccccttttggattatTAATAAATGTCAAAGACACAAACCATCTGCCTctcgtgtctgcatctgggtcttgtcTTGTGCCCTTATACACCTTCCAAATTGGCCAAATCCAGTCAATACATGATATTGTTTAGAGTAAAATCTTCATAGGTATTCTTATTTTCTGGGGAAAATTCTGGTATTGCATAGTACTTTGAGGTTTGTTCACAACTTCTGCTTCCCCATGTTGTATCAACACAAGCTTAAAACCACTTGAGCCCTGTTGAGGGTCCTTGTTGTGTTAGTTCAGTTGTTCACAAACTTTTTACAGTTCCGTACCCCtacaaacattcaacctccagctgcgtacctccTCTATCATCATGGTCAgggcactctcaaatgtttttgcCATCAttataagcctgccacacacacacacacaatacaatacatttattaaacataagaatgagtgtgagtttttgtcacaacccagctcgtgggaagtgacaaaaagctcttataggaccagggcacaaataataataataataaatcattttgctctttatttaaccatcttacatataaaaccttatttgttcattgaaaattgtgaataactcaccacaggttaatgagaagggtgtgcttgaaaggatgcacataactctgcaatgttgggttgtattggagagaatcTCAGTCTTAAATTATTTTCCActcacagtctgtgcctgtatttagttttcatgctagtgagggccgagaatccactctcacataggtacgtagttgcaaagggcatcagtgtcttaacagcgtgatttgccaaggcaggatactctgagcgcagcccaatccagaaatctgtcaatggcttctgattaaattacattttcacagaaccgcttgttgcaatttcgatgaggctctcttgttcagatattggtgaGTGGActagaggcagggcatgaaagggataacaaatccagttgtttgtgtcatcagtttcgggaaagtacctgcgtaattgtgcacccaactcactcaggtgcttctctatatcacatttgacattgtccgtaagcttgagttcatttgcacacacaaaaatcatacaatgatggaaagacctgtgtgttgtccttgttaatgcagacagagaagagctccaacttcttaatcatagcctcaattttgtgccgcacattgaatatagttgcggagagtccctgtaatcctagattcagatcgttcaggtgagaaaaaacatcatccagataggccagtcgtgtgagaaactcatcatcatgtgaaaattatggtcagtaaagaaaactttaagctcgtctctcaattccaAATaaagtgtcaatactttgccccttgataacagCACACTTCTGTaggttgtaaaagtgttacattgTCGATGCCCATATCATtgtgcagaaaatacatgagagttcaggggccttgctttaacaaagttaacaattttcactgtaatgtccaaaacgtctttcaagcggtcaggcattcccttggcagcaagagcctctcagtggattCTGCTGTGTACCGAAgtggcatcgggagcaactgcttgcacacacGTTACCACTCTAGTATGTCTTTATGTCATGActtttgtgccatcagtacagataccaacatgagaaGCAGCTATGTGTGGCTATATACGGACTGTTAGTGGAATTCCAgggagagagtaacggttaatgtgattggatgttaattatttcaCTAAGCTACCTGTATTTgccattgtgttgttatttcgctgaacactagatggttaaaTTTTATTTTTGATATTGAAATGAGGTTACTCAGGCAGGAAAAAAA

Function

symbol description
ncf1 Predicted to enable superoxide-generating NADPH oxidase activator activity. Acts upstream of or within defense response to fungus and respiratory burst. Predicted to be part of NADPH oxidase complex. Predicted to be active in cytoplasm. Is expressed in cardiovascular system; extension; macrophage; and myeloid leukocyte. Human ortholog(s) of this gene implicated in Williams-Beuren syndrome; autosomal recessive chronic granulomatous disease cytochrome b-positive type I; and chronic granulomatous disease. Orthologous to human NCF1 (neutrophil cytosolic factor 1).

NR:

description
neutrophil cytosolic factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1227500 False 2216 lncRNA 0.40 3 46226391 46284095
TU1227499 True 4282 lncRNA 0.42 9 46254330 46284095

Neighbor

gene id symbol gene type direction distance location
LOC110537691 LOC106567568 coding downstream 202715 46017383 ~ 46023676 (-)
LOC110537687 tiprl coding downstream 347885 45868111 ~ 45878506 (-)
LOC118937677 NA coding downstream 406285 45816854 ~ 45820106 (-)
LOC110538902 LOC106567602 coding downstream 411271 45732752 ~ 45815120 (-)
LOC110537682 LOC106567574 coding downstream 500070 45677378 ~ 45726321 (-)
LOC110537697 gatsl2 coding upstream 38252 46322347 ~ 46343466 (-)
LOC118937925 NA coding upstream 78233 46362328 ~ 46362459 (-)
LOC110537698 LOC106567561 coding upstream 98407 46382502 ~ 46689581 (-)
LOC110537699 LOC106567556 coding upstream 627362 46911457 ~ 47297035 (-)
LOC110537700 LOC106567555 coding upstream 1342561 47626656 ~ 47658365 (-)
G1078240 NA non-coding downstream 145349 46078119 ~ 46081042 (-)
G1078160 NA non-coding downstream 218308 45964019 ~ 46008083 (-)
G1078159 NA non-coding downstream 281399 45915318 ~ 45944992 (-)
G1078373 NA non-coding upstream 8310 46292405 ~ 46292660 (-)
G1078374 NA non-coding upstream 8651 46292746 ~ 46292969 (-)
G1078380 NA non-coding upstream 18841 46302936 ~ 46303323 (-)
G1078381 NA non-coding upstream 19399 46303494 ~ 46303699 (-)
G1078384 NA non-coding upstream 21375 46305470 ~ 46305720 (-)
G1078323 LOC106567565 other downstream 20303 46202604 ~ 46206088 (-)
gria4b LOC106567580 other downstream 1073054 45133844 ~ 45296904 (-)
LOC110537661 LOC101073377 other downstream 1625503 44546519 ~ 44601149 (-)
G1076460 NA other downstream 1771121 44454648 ~ 44455270 (-)
G1075509 NA other downstream 2451966 43774064 ~ 43774425 (-)
G1078783 NA other upstream 532348 46816443 ~ 46817065 (-)
LOC110537706 LOC106567549 other upstream 1630456 47911648 ~ 47942039 (-)
G1081055 NA other upstream 2134326 48418421 ~ 48418884 (-)
G1081571 NA other upstream 2617313 48901408 ~ 48905274 (-)
G1081813 NA other upstream 2703917 48988012 ~ 48988353 (-)

Expression


Co-expression Network