G1078292 (LOC106515459)


Basic Information

Item Value
gene id G1078292
gene name LOC106515459
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 46234750 ~ 46236938 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1227437
ggtgaatcattatttgaatatgttgttcTGAACAACCCAGTGGCATGAACAACCCAGGTCTTACCCAGTGGCATGAACAACCCAGGTCTTACCTTGTGGCATGCCAATGCCGTAGCCCTTGGTGTCCAGCAGGCCTCCTATCTGGGTGAGGTTACAGTTGTGCTGGCGGTCGTACTCATTCATGGTGCTCTCCAGCAGGTAGGCGTAGTTGGAGTTGAGCACCTGGTCGAAGCCTTCCTCCGTGCTCTTCACAAACACACTGGGTTACTTGGTGTGAATGAAGTTCCACATGCGCTGGTAGGTTTGGTACCGCGAGTTCTGCATGATGCCATACTATGTTGAGCTGGTCTGCCAGGTCGTGCGCTGACTCAATAAGAGCCTCCATCCTCTGGACAGTGAGGAAGGTGGCCAGGTTGGCCGTGTAGGAGGACACTATGATCAGTGTGAAAAACCACCAGACAGCGCTGAGGCAGCGTGTGGACAGGGCATGGCTGCTTGAACCCCCCCTACAGGGGACCACAGACTGTTCCCCAGAGTGTACTGGTTCAGAACCAGCTTAGAGCGCCCCCGCAGGCATGGCTCAGTACTGAACCACTCATACAGCCAGGAGAATAAAACCGGGTGCTCATTATAGGGAAAATTAAAGCATACAGCTAGGGTTGTGTTGAATAGGAACACAACAGAAGTCAAATATTTGAAAACGGGGGAGGAAAGCTACAATCTGATCTTAACCAATAAGTATGCTCCTTTTAATATGAAGTTTTCAAAATCATTTCCTCCAGTTTGTGCCTACCAAACAGGTCACCCCAAAAATGATAAGAGTGGAAATTAGACCGCAGCTTCAGAATAGAATACCTGTTACAGTCCACAGCACCGCCAGTAGGTGACTGTGTCAATCTGCACATTTACCTGGCCACTAGGAAGAGCACACAGCTGACGATCAGGTAGGCCAGCAGCATGCAGAGCCATAGGCCTGGAGAGAAGGGGTCTAAGAAGGACCAGTAGCCTGGTCGACGGGTCTAAAGAAGCCAGAGCATAAATCATTTAGCCTGGACTCTACCTccttaaaaaatgtttaaatcaCTTCGCCCATCTATTGGATTGAAGACAGACTGATAAGCGGAGTGAAAAAAATTGTGTTCATTCTGGATCCACCAGGCTATAAAGAATTACCATGGAGATTCAATAGTTTCCAGGAAAGTGCTATTCACGCATTGATATGGTTGATAAGAAACAATGGATTTGGGTACACTCACCAGGTTTGAGTGCCTAACCTCTATCAAAGACACTCAATTACCTTGATCAACTACAGTATATCAATGAAGTTTAGATTTCTTAAATTTCCAAGATGGTTGAAAATGAATATCTATAATAAACATATTGTGTTGTCTGGTTTCACCAAAGAACTGTGCAGTCATATTTGGCATCTTTCATTGACTCACTAGACAGATAACAGTGGAGAAATTGCCCATATGCACATATCTAGGATCAGCTTGGCATCCCCAATCCTAAACCGTTGACATTATGGAGaagaatgtaaaactgacctAAGCTCTTCATCCAATCTACTCATGGACTAAAGTCGGTGACCAATGTTTGACCAGTTCTCTATGCATGCCTGCGTGCTTGTGTCTCACCACATCATGCTGTGTACATGATGCTGATGCCCAGGGTTATGAAGGGTTTGGAGAAGTCAatgaccttctctctctctctgagatggtGTGTCCCTCTACAGCCAGGTCAGCTTT

Function

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1227437 True 1751 lncRNA 0.46 3 46234750 46236938

Neighbor

gene id symbol gene type direction distance location
LOC110537691 LOC106567568 coding downstream 211074 46017383 ~ 46023676 (-)
LOC110537687 tiprl coding downstream 356244 45868111 ~ 45878506 (-)
LOC118937677 NA coding downstream 414644 45816854 ~ 45820106 (-)
LOC110538902 LOC106567602 coding downstream 419630 45732752 ~ 45815120 (-)
LOC110537682 LOC106567574 coding downstream 508429 45677378 ~ 45726321 (-)
foxr1 LOC106567616 coding upstream 4592 46241530 ~ 46243978 (-)
LOC110537697 gatsl2 coding upstream 85409 46322347 ~ 46343466 (-)
LOC118937925 NA coding upstream 125390 46362328 ~ 46362459 (-)
LOC110537698 LOC106567561 coding upstream 145564 46382502 ~ 46689581 (-)
LOC110537699 LOC106567556 coding upstream 674519 46911457 ~ 47297035 (-)
G1078240 NA non-coding downstream 153708 46078119 ~ 46081042 (-)
G1078160 NA non-coding downstream 226667 45964019 ~ 46008083 (-)
G1078159 NA non-coding downstream 289758 45915318 ~ 45944992 (-)
G1078373 NA non-coding upstream 55467 46292405 ~ 46292660 (-)
G1078374 NA non-coding upstream 55808 46292746 ~ 46292969 (-)
G1078380 NA non-coding upstream 65998 46302936 ~ 46303323 (-)
G1078381 NA non-coding upstream 66556 46303494 ~ 46303699 (-)
G1078384 NA non-coding upstream 68532 46305470 ~ 46305720 (-)
G1078323 LOC106567565 other downstream 28662 46202604 ~ 46206088 (-)
gria4b LOC106567580 other downstream 1081413 45133844 ~ 45296904 (-)
LOC110537661 LOC101073377 other downstream 1633862 44546519 ~ 44601149 (-)
G1076460 NA other downstream 1779480 44454648 ~ 44455270 (-)
G1075509 NA other downstream 2460325 43774064 ~ 43774425 (-)
G1078783 NA other upstream 579505 46816443 ~ 46817065 (-)
LOC110537706 LOC106567549 other upstream 1677613 47911648 ~ 47942039 (-)
G1081055 NA other upstream 2181483 48418421 ~ 48418884 (-)
G1081571 NA other upstream 2664470 48901408 ~ 48905274 (-)
G1081813 NA other upstream 2751074 48988012 ~ 48988353 (-)

Expression


Co-expression Network