G1079516



Basic Information


Item Value
gene id G1079516
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 47362538 ~ 47365152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1228727
ggagaagcggaccaaaaagcagcgtggtggttactcatgttctttaatggaaaatgaacgatacatgaaataacttaaatctacaaaacaacaaacggaacgtgaaaaacctatacagcctatcctgtgacaacaaacacagtgacaggaacaatcacccacaaacacacagtgaaacccaggctacctaagtatgattctcaatcagagacaactaatgacacctgcctctgattgagaaccatactaggccgaaaacatagaaatgccccaaaacatagaaaaacaaacatagactgcccacccaactcacgccctgaccatactaaatacaaaacaacggaaatcaaggtcagaacgtgacagtaccccccccc

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1228727 True 377 lncRNA 0.43 2 47362538 47365152

Neighbor


gene id symbol gene type direction distance location
LOC110537699 LOC106567556 coding downstream 65503 46911457 ~ 47297035 (-)
LOC110537698 LOC106567561 coding downstream 672957 46382502 ~ 46689581 (-)
LOC118937925 NA coding downstream 1000079 46362328 ~ 46362459 (-)
LOC110537697 gatsl2 coding downstream 1019072 46322347 ~ 46343466 (-)
foxr1 LOC106567616 coding downstream 1118560 46241530 ~ 46243978 (-)
LOC110537700 LOC106567555 coding upstream 261504 47626656 ~ 47658365 (-)
LOC110537701 LOC106567554 coding upstream 297892 47663044 ~ 47711376 (-)
LOC110537702 LOC106567552 coding upstream 347858 47712366 ~ 47791030 (-)
LOC110537706 LOC106567549 coding upstream 546496 47911648 ~ 47942039 (-)
LOC110538906 ovol2 coding upstream 1856749 49221901 ~ 49228404 (-)
G1079514 NA non-coding downstream 2930 47359286 ~ 47359608 (-)
G1079513 NA non-coding downstream 3892 47358418 ~ 47358646 (-)
G1079506 NA non-coding downstream 5984 47346637 ~ 47356554 (-)
G1079391 NA non-coding downstream 170980 47191330 ~ 47191558 (-)
G1079390 NA non-coding downstream 171284 47190782 ~ 47191254 (-)
G1079534 NA non-coding upstream 8122 47373274 ~ 47373539 (-)
G1080102 NA non-coding upstream 167914 47533066 ~ 47533377 (-)
G1080115 NA non-coding upstream 180733 47545885 ~ 47546201 (-)
G1080117 NA non-coding upstream 181945 47547097 ~ 47547356 (-)
G1080121 NA non-coding upstream 187752 47552904 ~ 47553182 (-)
G1078783 NA other downstream 545473 46816443 ~ 46817065 (-)
G1078323 LOC106567565 other downstream 1156450 46202604 ~ 46206088 (-)
gria4b LOC106567580 other downstream 2209201 45133844 ~ 45296904 (-)
LOC110537661 LOC101073377 other downstream 2761650 44546519 ~ 44601149 (-)
G1076460 NA other downstream 2907268 44454648 ~ 44455270 (-)
G1081055 NA other upstream 1053269 48418421 ~ 48418884 (-)
G1081571 NA other upstream 1536256 48901408 ~ 48905274 (-)
G1081813 NA other upstream 1622860 48988012 ~ 48988353 (-)
G1081829 NA other upstream 1644197 49009349 ~ 49010152 (-)

Expression



Co-expression Network