G1080246


Basic Information

Item Value
gene id G1080246
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 47830121 ~ 47831801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1229513
AGGAAGTAAATAAATTAGAAAAAAATTAAAGAGCGAGAGCAGGTGTTCAAGATGGTAGATGAAATACAAAAGGCACTAAATGTACTACATTCCAGTTAAGACATCgaacagaagaagaaaaataaaatcaTATAGTGCTTGTGGTCTTTGATATGCGGGATATAGTGCAGGTTTTGCAACATACAATATTATATAAACAAGCACCAAATGACACACACTACATTGCTACTTAACAGCTAAAAGTACGACTTCACACTTAAGACACGTAACAGTGGAATGGGTTTTGTAAACTGTACTTATCCAAACTTTGACACCGTCATTTTTTGAGAATCTGAGCGTACTGTAAACAAAACGCTTTTTCATAATGCATAATCAAGGACAATACTACCTTAACTAttaccacacacacgcactaatGCTGCAAAAGCACAAGATAAGCTACAGTATTTGATGTATTTTTTTGGAATGTAAATTGTCAATTACTTTTGCTATATTTTGCAGGACTAGTGGATAAGGCAGTTTTGGAATAAAGAAATGACGCTTCCTCTAGCATTCTTACGGTGATCAAAACCATTTTGTCAACAGCAAAAACATAGTTAAAAACACTAAAGACGGATTTTTAAGACTTGACAGTGGAGGGCTCAGCATCAAGACAGAGCAtttaataaaaaatttaaaaagataCACAATacactggttcagtctgctttccaacagacactaggaGTCAAATTCGcttttcagtaggacaataacctaaaacacaaggccaaatatacactggagttgcttaccaagacgacattgaatattcctgatTGGCCTAGTTGCAGTTTGGACTTAAATGGGCTTGGAAATCTATGATAAAACTtagaaatggctgtctagcaaagatcaacaaccaacttgacagaaatTGAAGAATTTTTAAATAATACATGTGCAGATACTGTACAattcaggtgtgtaaagctcttagaggcttacccagaacgactcacagctgtgataactgccaaaggtgattctaacatgtattgacagaggggtgtgaatacttatgtgaatgtactatttctgtatttcattttcaataaatttgctaacaaaAATTCACTTTTCACTGTCATGTGGTATTGTGGGTAGctgggtaaaacaaaaaaaaaacatatccatttagaattcaggctgtaacagaatAAAATGTGGAGGacatcaaggggtatgaatactttctgaaggcagtgtttCTCTAATCTCTGTGTTGTATTATTGTATTGAAATCCTTGGTAGTGTAACTGTTTTACCACACACATGAACATGCAATGAATGCTTTCAGCAGACAAAAGGACAAATTAATTACAAAAAATAAATCTTTCAAAACAGCATAAATTCTAACCTTGTATTTAaacaacccccacccacccatcccAAAGCAGCGAGCTATGGTGGCCTGTCCATTTTCGTCTCCAGTTCTCTTCAGTTTTTCCTTATGTCAGCGTAGACCACTGGCTCCATCTTGTGGAATGAGTTGGGGTTCTTGGTCCCTGTTGTGATGAGCATATGGATGGGTGGGGAGATcaggaaaaggggaggggggaaggCTGTGTTAGTAAAAATACATGTCAGACTGGTTCAGCTGTTAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1229513 True 1647 lncRNA 0.37 2 47830121 47831801

Neighbor

gene id symbol gene type direction distance location
LOC110537702 LOC106567552 coding downstream 39091 47712366 ~ 47791030 (-)
LOC110537701 LOC106567554 coding downstream 118745 47663044 ~ 47711376 (-)
LOC110537700 LOC106567555 coding downstream 171756 47626656 ~ 47658365 (-)
LOC110537699 LOC106567556 coding downstream 533086 46911457 ~ 47297035 (-)
LOC110537698 LOC106567561 coding downstream 1140540 46382502 ~ 46689581 (-)
LOC110537706 LOC106567549 coding upstream 79847 47911648 ~ 47942039 (-)
LOC110538906 ovol2 coding upstream 1390100 49221901 ~ 49228404 (-)
LOC110537714 dlg2 coding upstream 1478420 49310221 ~ 49598356 (-)
LOC110537716 NA coding upstream 1786767 49618568 ~ 49673217 (-)
crebzf crebzf coding upstream 1849160 49680961 ~ 49688023 (-)
G1080244 NA non-coding downstream 28511 47794471 ~ 47801610 (-)
G1080128 NA non-coding downstream 198524 47558586 ~ 47631597 (-)
G1080126 NA non-coding downstream 273710 47556123 ~ 47556411 (-)
G1080125 NA non-coding downstream 275326 47554568 ~ 47554795 (-)
G1080295 NA non-coding upstream 31222 47863023 ~ 47863384 (-)
G1080296 NA non-coding upstream 31870 47863671 ~ 47863989 (-)
G1080352 NA non-coding upstream 123175 47954976 ~ 48024877 (-)
G1080439 NA non-coding upstream 250253 48082054 ~ 48082319 (-)
G1080972 NA non-coding upstream 460875 48292676 ~ 48292893 (-)
G1078783 NA other downstream 1013056 46816443 ~ 46817065 (-)
G1078323 LOC106567565 other downstream 1624033 46202604 ~ 46206088 (-)
gria4b LOC106567580 other downstream 2676784 45133844 ~ 45296904 (-)
LOC110537661 LOC101073377 other downstream 3229233 44546519 ~ 44601149 (-)
G1076460 NA other downstream 3374851 44454648 ~ 44455270 (-)
G1081055 NA other upstream 586620 48418421 ~ 48418884 (-)
G1081571 NA other upstream 1069607 48901408 ~ 48905274 (-)
G1081813 NA other upstream 1156211 48988012 ~ 48988353 (-)
G1081829 NA other upstream 1177548 49009349 ~ 49010152 (-)

Expression


Co-expression Network