G1084871 (LOC106567513)


Basic Information

Item Value
gene id G1084871
gene name LOC106567513
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 51428798 ~ 51467760 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1234410
tttttcttttttTCAGTTGCAACTCATGTTTATTCAGGAACAGTTCATAACACCACATCACacctcaatgtttttttttacctgccTTCTCTGGGTTTTGatacaacagtaaaaaaaaaagaacataaaaaaacaataacaaagatCAAGTCAAACTAACATAAATATAATCACCACTTGGATTGCTTGAAGTTAAAACACAACGACTTCCTCACAACCTCTTCCTCCGCTAATTGGGATAGCAAAAATAAagctctcctcatcctcctcgccTCTTTCTGAAAACATATTACAATCAACTGCCTTGTCTAGGACAGGTAGACCAAACAGACGCATAGAAAATAATTGTGAAAGAGAGTGACCCAGGGTTaagcctgtctgtcttcccctTGGTGTTAGTCACCAAGCTAAGGGCTGTCGGTCAGGTATAGTGTACAGAAATGTGAAGACTCTCAGAGTGTTGAGATTTAAAACAGCACAACATTATGTTTCAATGTTATGTTCTTGAATGCAGGTTATGATGGTCTGCTGCTTCAAAACGAGATCCCACATTGCCATGAAAATAACAAATAAAGACAGAGGTGAATAACTGTTATTTCAAATCAGGTTTGTTACCTTTATCATTTCATTTTCTTTATCCATTAATGTTCACAAAGCTCAGAATTACAATTTCACGACCCAGGCCATGGAAGTTGAGCTTGGTATTTCTTGCGCAAGGGTTTCCATTTACCTTTTactaccccccccacccccccagatGACTTGCTAAACGGTATGTATAGGAACAGGCATTAAGCTTGAAGCGATTGCAAAGGACAGTTTCTCAATGGAATCTACAGCCAGGATGGAGCAGAGCGCAAGGGAAAATAAACATGACAACCATTTCTACCAACATGCTATTACATGTTTACAAAATATCTGTATTACcagatgtgtttttttatttaaatcttgtttcctgtttttttatttattttttatttttttatcgtTAATGACTATCACTTCTGGTTCAACAACCCAGGGAGCCAGCGACAACATCTTTCACAAAGCTACGTTACATCTACCATACATACTCACAATGCCACCTATCAGTAATGGACGTCACTGCATGTTATTATTACATCGCTATAGCGAACTACCGTATATCTGCAGACTAGTACTCAAAAAAAGGGTGACATTGAAAGCCGAACGTGAcggaagggggaaaaaaaactaagAATTGCTTTGAGAAAAGCAGTGTTACTTTTCCTAGGGGAACAGGCATCGGAACACTGTGGGTCATTGGTCATGGACAGTTATCATGAGGTTCATTGAACTATTTTATGGACTCAGAGTAGAACCTAAACTGTCAATGCACAGTTAAAACAATGACTAATGTTGACAGTGAGGGACAGTAATACACATTGATTACCTATATTCTGGTTATGACCATGCTCATGTAATTCCACGGCATACAAATTCAATCTTTGTGTAAAGGTTTTGCCAAATATCCTTCAAATTAACCCGTTGTTCTAGCGACTGACCTGCAATTCCCTAGGAGGAGGAAAACTGTGCTTTAGAAGCTTAAGCAGGTAGCATTGTGGCTGGTAAGGCATGAGGATTCAGTGTTTTGCTCAACTCTTAACTTGTAACTAATCATGTCTCCGTCTTCTCCCAGTGAGGTTAGTGTGGTGTTATTCAGTCAATAGGGGGCGCTCTTTACCTGGCCAGTAACGTGTTCAGGTAGTCCGGGGTGGTGGGGTCCGGGCTGAGGGGGGGTGATGTCACAAAGGAGGCGGCCTTGGCCCAGTTCTTGCTCCAATAGTGTGTCCCGTCAGTCCCGAGGCTGGCCGTGATTGGCTCGCCGAACACAACGTTACCTTTTTTTCCTGGCCTGTGAGATGATGTCGGCAGCACTCTTGCTCATGACCCTGGTCACGTACAGAGGGCAGTTGGTCTGGCTGGCAATGGTGATGGCACGGAACACAGCCTCCGCCTCCTCCTCTGGCCTGCTCAGCACGTGTCCCTCTGGTCCAGTGATTCCCATCTCCAGCATGCGTGCCTGCTCCTCGGCGATGATCTCTCCATTCTCAGCATGGACCTGCACAATGCCACCCATCTCTCCCAGGAAGGTAAAGATCTCATACAGCTCACTGTTGCTCATCTGGTAGAAGTCCTTATAGGCCATGTAGACCTGGAAAGAGttcacCTTTCTCCTTGAGCAGTGTGTCTACTTCCTGCTTGACGCTGTCATTCCAATGGGTGATGTCCACATGGAGGGAGTAGTCACAGCAGGTCTTTTCATCGGCCCAGCTTCTCCACTGCTCAAAGGCCTCAATCAGACTGTTGCCCGGCTCTGGGATCACATGGTCCACGATCATGGTGGTTCCCCCCGCCAGGGCCGCCTTGGATCCCTGGGAGAAGTCATCTACGGTGGTGGTGCCCCGGTAGGGCATCTGGAAGTGTGTGTGGATGTCAATGCCACCGGGGATCACCATCTTGCCGTTGGCCTCGACGGTCTTGATCCCTCCTGGGACGATCAGGTTGTCTCCAATCTGCCTGGACGTTTAGAAGGGGAGAAAAGCCATGTCAGGGCAGGGGTATCATCGAGTTGACACAATGCTATGCATTCATGATATGAACAGCTAAATAGCTAATGAATGAACTGAAATGAATATATTATCATGTCATAAGAAATGTAGTTTTG
>TU1234409
gttttttttcCTTCAGTTGCAACTCATGTTTATTCAGGAACAGTTCATAACACCACATCACacctcaatgtttttttttacctgccTTCTCTGGGTTTTGatacaacagtaaaaaaaaaagaacataaaaaaacaataacaaagatCAAGTCAAACTAACATAAATATAATCACCACTTGGATTGCTTGAAGTTAAAACACAACGACTTCCTCACAACCTCTTCCTCCGCTAATTGGGATAGCAAAAATAAagctctcctcatcctcctcgccTCTTTCTGAAAACATATTACAATCAACTGCCTTGTCTAGGACAGGTAGACCAAACAGACGCATAGAAAATAATTGTGAAAGAGAGTGACCCAGGGTTaagcctgtctgtcttcccctTGGTGTTAGTCACCAAGCTAAGGGCTGTCGGTCAGGTATAGTGTACAGAAATGTGAAGACTCTCAGAGTGTTGAGATTTAAAACAGCACAACATTATGTTTCAATGTTATGTTCTTGAATGCAGGTTATGATGGTCTGCTGCTTCAAAACGAGATCCCACATTGCCATGAAAATAACAAATAAAGACAGAGGTGAATAACTGTTATTTCAAATCAGGTTTGTTACCTTTATCATTTCATTTTCTTTATCCATTAATGTTCACAAAGCTCAGAATTACAATTTCACGACCCAGGCCATGGAAGTTGAGCTTGGTATTTCTTGCGCAAGGGTTTCCATTTACCTTTTactaccccccccacccccccagatGACTTGCTAAACGGTATGTATAGGAACAGGCATTAAGCTTGAAGCGATTGCAAAGGACAGTTTCTCAATGGAATCTACAGCCAGGATGGAGCAGAGCGCAAGGGAAAATAAACATGACAACCATTTCTACCAACATGCTATTACATGTTTACAAAATATCTGTATTACcagatgtgtttttttatttaaatcttgtttcctgtttttttatttattttttatttttttatcgtTAATGACTATCACTTCTGGTTCAACAACCCAGGGAGCCAGCGACAACATCTTTCACAAAGCTACGTTACATCTACCATACATACTCACAATGCCACCTATCAGTAATGGACGTCACTGCATGTTATTATTACATCGCTATAGCGAACTACCGTATATCTGCAGACTAGTACTCAAAAAAAGGGTGACATTGAAAGCCGAACGTGAcggaagggggaaaaaaaactaagAATTGCTTTGAGAAAAGCAGTGTTACTTTTCCTAGGGGAACAGGCATCGGAACACTGTGGGTCATTGGTCATGGACAGTTATCATGAGGTTCATTGAACTATTTTATGGACTCAGAGTAGAACCTAAACTGTCAATGCACAGTTAAAACAATGACTAATGTTGACAGTGAGGGACAGTAATACACATTGATTACCTATATTCTGGTTATGACCATGCTCATGTAATTCCACGGCATACAAATTCAATCTTTGTGTAAAGGTTTTGCCAAATATCCTTCAAATTAACCCGTTGTTCTAGCGACTGACCTGCAATTCCCTAGGAGGAGGAAAACTGTGCTTTAGAAGCTTAAGCAGGTAGCATTGTGGCTGGTAAGGCATGAGGATTCAGTGTTTTGCTCAACTCTTAACTTGTAACTAATCATGTCTCCGTCTTCTCCCAGTGGATGTTGTCATCTTCTGACTGGTCTCTATCCTGGTTCAACCTCTTAGCTAAGGGATGTGATGTTGGAGCGACCACCGGGGGGAACTACGATGCGGCGTCCCGCTGGCCGGATGGGGAGATCCTCTGTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1234410 False 2689 lncRNA 0.45 9 51428798 51467760
TU1234409 True 1791 lncRNA 0.40 2 51449030 51458681

Neighbor

gene id symbol gene type direction distance location
LOC110537741 LOC106567608 coding downstream 90167 51320552 ~ 51338631 (-)
LOC110537739 LOC106567515 coding downstream 211414 51152512 ~ 51217384 (-)
LOC110537738 LOC106567517 coding downstream 314768 51095020 ~ 51114030 (-)
LOC110537737 LOC106567519 coding downstream 344001 51010718 ~ 51084797 (-)
fnip1 LOC106567520 coding downstream 422234 50970561 ~ 51006564 (-)
LOC110537747 LOC106567509 coding upstream 122425 51589242 ~ 51674907 (-)
LOC118937680 NA coding upstream 136754 51604514 ~ 51607138 (-)
LOC110537750 LOC106567508 coding upstream 211360 51679120 ~ 51684103 (-)
LOC118937887 NA coding upstream 272889 51740649 ~ 51754384 (-)
LOC110537751 LOC106567507 coding upstream 471103 51938863 ~ 52018035 (-)
G1084630 NA non-coding downstream 26027 51400608 ~ 51402771 (-)
G1084539 NA non-coding downstream 143516 51284483 ~ 51285282 (-)
G1084609 NA non-coding downstream 146915 51278882 ~ 51281883 (-)
G1084585 NA non-coding downstream 177554 51250996 ~ 51251244 (-)
G1084583 NA non-coding downstream 179940 51248513 ~ 51248858 (-)
G1084911 NA non-coding upstream 10675 51478435 ~ 51478673 (-)
G1084995 LOC106567511 non-coding upstream 114388 51582148 ~ 51583886 (-)
G1085067 NA non-coding upstream 265279 51733039 ~ 51733378 (-)
G1084224 NA other downstream 599683 50828404 ~ 50829115 (-)
G1083278 NA other downstream 1143485 50284499 ~ 50285313 (-)
G1082693 NA other downstream 1747995 49677432 ~ 49680803 (-)
G1081829 NA other downstream 2418646 49009349 ~ 49010152 (-)
G1081813 NA other downstream 2440445 48988012 ~ 48988353 (-)
G1084908 NA other upstream 8657 51476417 ~ 51476771 (-)
LOC110537745 LOC106567512 other upstream 44380 51453362 ~ 51520396 (-)
G1087093 NA other upstream 1664045 53131805 ~ 53132875 (-)
G1090502 NA other upstream 4594670 56062430 ~ 56062707 (-)
LOC110537819 LOC106567417 other upstream 4815994 56283753 ~ 56378107 (-)

Expression


Co-expression Network