G1086237 (LOC106567502)


Basic Information

Item Value
gene id G1086237
gene name LOC106567502
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 52649604 ~ 52657495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1235839
AGGGAGACATCCAATGCGATGGTTGCATTTATTTTCAATGAAAACGAGTACTTCTAGTCTTTCGACATAAACATTTCTATTGTTAGTCCAGGCCTCTTAGTTTCTGCATTGTATATGGGCCGTGTAAACTGACACCACTCACATACTCATGTCAATGGCTTACGGTACATCACAATTAGACAACATACAGGATAGTGTGCTTTATCATATCCATTTTTCATATCTGCATTTTAATAAAGCCAAGTAAGTTCTGAAAATATTCACATACAGGTTTCTGGATTAACATAAAACAGCACCAGAAATGATTGCATATTTTTAATATTTAGTACTAGTATACTTGATGGTACCTACATATACCGGtttgcaaaaatataaatatacaggTACTGTACTTAGTTACGTTATTGCTATGCAGGATTAAGGTCTGGCCTTGTTTGGCTCAGAATTCAGACCCCACTCTGAGGTGTACGGCCATTGTCTTATGTCAGATAGCGTAATGAAATGTCTACACTGTCGGTTGAATGTCACGTAGGAGTGACGCCACCTGATGTAAGACAATGGTGTTTGGCTGGTGAGGAGTCGAGTCCACCTACACTACCAGTAAATGCTTATCCGTTAACATTACATTAACTGACAATATGGGAGAACAAGGTAACAACACAAGTTAGTACCAAAAAACAGTGAAGTTCAAAGTCCATGATTTGTTGTTGTGCCTTCTGTTATAAATCAGTGATGGTGAGCAAAACACATCAGTAAGTCTCAAACTAGAAAAAGAACaagatgtataaaaaaaacatgttccaAATTATAACATTAATGATCCTAGAGAAGGGAATGGCCACTGTCAGCAAGTTAGCTCTCTCGGTCTCCTGTCCCATCAGGGTCTTTGGTCCATGTGCACAATGTCATGAAGGAATGTCAAAAAACAAACGTTGACGTCACTATGATGATGGAAGACAAATCCATGGTCGGCTTGGCATACTGGGCTCATACATTAATTTTTCTTGTCCTTGTCCTTCTTGAGTGGCTGGGCTAAGGACAACGTCTCAGCTGCCACCTTCCTGCGGTTGAAGGCGTTCATTTCCTCTTCCAGTTCCcgcctcttctcctccaccttcctcttctcctcctggtGCATATGCTTCAGCTGCTCAAATTTGTTGTGCAActctctctccttctctttcagcTCTGCCTCAGTCTCCTTCACTTTGTTGACAAACATctgtctcatctcctcctccttcttctgcAGGTCTCCCATGAACTCTTTCCTCTTGGCTTCGTAGGTCTCCTGGAGGCTGAATGGCTCACAGTCAGGGTCTGTATCTTTGAATCCCATCTCCTCCAGTTTGCAGCGGCGGTAGAGCTCGTAGTGGCGGGCATGAGTCTGCTCCCTCAGGTCCTCCATGTTCACCCTGATTAGCATCTCACGCAGCTTCACAAAGTCACAGTGGCTCTCGTTCTCCACTGGACGGGACAGCACAGAGACAATGCAATGTCAACGAGACTATGTTACTAACATCTGAGGTCACAGGCACCACCATCAACCACG

Function

NR:

description
septin-8-A isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1235839 True 1555 TUCP 0.43 4 52649604 52657495

Neighbor

gene id symbol gene type direction distance location
LOC110537755 LOC106567504 coding upstream 417376 52164071 ~ 52232228 (+)
LOC110537753 LOC106567505 coding upstream 525204 52087532 ~ 52124400 (+)
LOC110537754 LOC106603847 coding upstream 584432 52026941 ~ 52065243 (+)
LOC110537746 LOC106567511 coding upstream 1061713 51547730 ~ 51587891 (+)
LOC110537744 LOC106567513 coding upstream 1198796 51414096 ~ 51450808 (+)
LOC110537762 LOC106567497 coding downstream 146732 52804227 ~ 52821797 (+)
LOC110537763 rnf14 coding downstream 179183 52836678 ~ 52842725 (+)
endou2 LOC106567496 coding downstream 185624 52843119 ~ 52851325 (+)
LOC110537765 LOC106567495 coding downstream 194156 52851651 ~ 52861272 (+)
LOC110537768 LOC106567493 coding downstream 347334 53004829 ~ 53132925 (+)
G1086161 NA non-coding upstream 105235 52544128 ~ 52544369 (+)
G1086152 NA non-coding upstream 111574 52537802 ~ 52538030 (+)
G1086147 NA non-coding upstream 112994 52536379 ~ 52536610 (+)
G1086113 NA non-coding upstream 135563 52513416 ~ 52514041 (+)
G1086112 NA non-coding upstream 136537 52512867 ~ 52513067 (+)
G1086381 NA non-coding downstream 190531 52848026 ~ 52848279 (+)
G1086390 NA non-coding downstream 212567 52870062 ~ 52870307 (+)
G1086400 NA non-coding downstream 222048 52879543 ~ 52879750 (+)
G1086404 NA non-coding downstream 227700 52885195 ~ 52885522 (+)
G1086409 NA non-coding downstream 237074 52894569 ~ 52894887 (+)
G1082266 NA other upstream 2968800 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 3349257 49262142 ~ 49300347 (+)
G1081353 NA other upstream 3902105 48746955 ~ 48747499 (+)
G1077322 NA other upstream 6640995 46004151 ~ 46008609 (+)
nrgna NA other upstream 6729343 45900621 ~ 45920265 (+)
G1087914 NA other downstream 1452195 54109690 ~ 54148962 (+)
LOC110538908 LOC106603872 other downstream 1616811 54253719 ~ 54283905 (+)
G1091217 NA other downstream 4068112 56725607 ~ 56726003 (+)
G1091235 NA other downstream 4094923 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 4458330 57112902 ~ 57118165 (+)

Expression


Co-expression Network